Photo by JNTO
Boutique Hotels & Resorts in Shinjuku from AU$126
Change your mindBook hotels with free cancellation
Be pickySearch almost a million properties worldwide
Check availability on Shinjuku Boutique Hotels
Our top choices for Shinjuku boutique hotels
9.8 out of 10, Exceptional, (1,128 reviews)
"Clean room, good service, beautiful garden and delicate food. Perfect stay for a week."
Michael
The price is AU$419
1 Sept - 2 Sept
9.8 out of 10, Exceptional, (1,002 reviews)
"My favorite hotel perfect to do anything."
Mie
The price is AU$660
26 Aug - 27 Aug
9.8 out of 10, Exceptional, (1,005 reviews)
"One of the best hotels I’ve stayed with excellent location, great room condition and amenities, and last but not the least wonderful staff."
Wei
The price is AU$807
30 Aug - 31 Aug
9.4 out of 10, Exceptional, (1,003 reviews)
"The hotel rooms were nice and the breakfast buffet was great. Would come again!"
Jonathan
The price is AU$126
31 Aug - 1 Sept
9.8 out of 10, Exceptional, (1,003 reviews)
"Great hotel, great location, super helpful staff, and wonderful places to eat."
Jaclyn
The price is AU$1,072
19 Aug - 20 Aug
9.0 out of 10, Wonderful, (1,001 reviews)
"Staff very friendly and helpful…….location had enough places outside of hotel to venture and eat."
Sylvester
The price is AU$259
1 Sept - 2 Sept
9.6 out of 10, Exceptional, (1,004 reviews)
"The very best accommodation and our absolutely favorite stay of our trip. Thank you for your hospitality"
Consuelo
The price is AU$1,076
25 Aug - 26 Aug
9.6 out of 10, Exceptional, (637 reviews)
"Great place, one of the best."
arman
The price is AU$996
31 Aug - 1 Sept
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Top Shinjuku Hotel Reviews
Hotel Rose Garden Shinjuku
8/10 Good
Frequently asked questions
Explore a world of travel with Expedia
- Akasaka Hotels
- Akihabara Hotels
- Asakusa Hotels
- Adventure Sport Hotels in Tokyo Prefecture
- Cheap Hotels in Tokyo Prefecture
- Tokyo Prefecture Hotels
- Ginza Hotels
- Hotels near Haneda
- Family Hotels in Harajuku
- Cheap Hotels in Kabukicho
- Hankyu Dai Ichi Hotel Group in Kabukicho
- Hotels with Parking in Kabukicho
- Romantic Hotels in Kabukicho
- Villa Fontaine Hotels in Kabukicho
- Kabukicho Hotels
- Hotels near Shibuya Crossing
- Boutique Hotels in Shibuya
- Business Hotels in Shibuya
- Cheap Hotels in Shibuya
- Family Hotels in Shibuya
- Hotels with Pool in Shibuya
- Hyatt Hotels in Shibuya
- Luxury Hotels in Shibuya
- Romantic Hotels in Shibuya
- Shibuya Hotels
- Shimokitazawa Hotels
- Lgbt Welcoming Hotels in Shinjuku Golden Gai
- Shinjuku Golden Gai Hotels
- Hotels near Shinjuku Isetan
- Hotels near Shinjuku Station
- Adventure Sport Hotels in Shinjuku
- Apa Hotels in Shinjuku
- Best Western Hotels in Shinjuku
- Business Hotels in Shinjuku
- Cheap Hotels in Shinjuku
- Family Hotels in Shinjuku
- Fujita Kanko Hotels in Shinjuku
- Golf Hotels in Shinjuku
- Hilton Hotels in Shinjuku
- Hotels with Parking in Shinjuku
- Hotels with Pool in Shinjuku
- Luxury Hotels in Shinjuku
- Romantic Hotels in Shinjuku
- Shinjuku Hotels
- Apartments in Tokyo
- Capsule Hotels in Tokyo
- Hostels in Tokyo
- Accor Hotels in Tokyo
- Apa Hotels in Tokyo
- Boutique Hotels in Tokyo
- Business Hotels in Tokyo
- Cheap Hotels in Tokyo
- Family Hotels in Tokyo
- Langham Hotels in Tokyo
- Lgbt Welcoming Hotels in Tokyo
- Luxury Hotels in Tokyo
- Spa Hotels in Tokyo
- Tokyo Hotels
- Caravan Parks in Tokyo Prefecture
- Serviced Apartments in Tokyo
- Hotels near Tokyo Station
- Hotels near Tokyo Tourist Information Center
- Ueno Hotels
- Ikebukuro Holidays
- Kabukicho Holidays
- Meiji Jingu Shrine
- Roppongi Hills
- Samurai Museum
- Shibuya Crossing
- Shinjuku Gyoen National Garden
- Shinjuku Holidays
- Studio Alta
- Visit Akasaka
- Visit Harajuku
- Visit Kabukicho
- Visit Nishi-Shinjuku
- Tokyo Prefecture Holidays
- Visit Roppongi
- Visit Shibuya
- Visit Shinjuku
- Visit Toshima
- Visit Udagawacho
- Tokyo Holidays
- Visit Tokyo
- Yoyogi Park