A sandy beach with a lifeguard tower, ocean waves, and people in the distance.

Boutique Hotels & Resorts in Mission Beach from AU$170

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check availability on Mission Beach Boutique Hotels

Our top choices for Mission Beach boutique hotels

1. Pacific Terrace Hotel

Pacific Terrace Hotel
4.0 star property
Pacific Beach
9.8 out of 10, Exceptional, (1,002 reviews)
"Exceptional resort Amazing Staff, location, and bar/restaurant."
United States
Nancy
The price is AU$400
includes taxes & fees
18 Nov - 19 Nov
Pacific Terrace Hotel

2. Tower23 Hotel

Tower23 Hotel
4.0 star property
Pacific Beach
9.6 out of 10, Exceptional, (1,001 reviews)
"I loved this hotel so much I will definitely stay there again the location is prime and the restaurant is incredible"
United States
Tierney Shea
The price is AU$497
includes taxes & fees
27 Oct - 28 Oct
Tower23 Hotel

3. The Pearl Hotel

The Pearl Hotel
4.0 star property
Point Loma
8.8 out of 10, Excellent, (1,000 reviews)
"Always enjoy staying at The Pearl"
United States
Jane
The price is AU$235
includes taxes & fees
23 Nov - 24 Nov
The Pearl Hotel

4. Pantai Inn

Pantai Inn
3.5 star property
Village of La Jolla
9.4 out of 10, Exceptional, (1,000 reviews)
"Old style Balinesian hotel ... Rooms were nice with kitchen and living room. Great location. Staff was very nice. Would stay there again."
United States
Michael
The price is AU$704
includes taxes & fees
1 Nov - 2 Nov
Pantai Inn

5. Scripps Inn La Jolla Cove

Scripps Inn La Jolla Cove
3.5 star property
Village of La Jolla
9.4 out of 10, Exceptional, (1,001 reviews)
"Best view is probably room 15. This place was great bc everything was withing walking distance. Def recommend staying here if you want to be close to the beach."
United States
Ana
The price is AU$404
includes taxes & fees
25 Oct - 26 Oct
Scripps Inn La Jolla Cove

6. Westgate Hotel

Westgate Hotel
4.5 star property
Downtown San Diego
9.4 out of 10, Exceptional, (1,060 reviews)
"Great location. Helpful staff."
United States
Arlet
The price is AU$281
includes taxes & fees
10 Nov - 11 Nov
Westgate Hotel

7. Hotel Republic San Diego, Autograph Collection

Hotel Republic San Diego, Autograph Collection
4.0 star property
Downtown San Diego
9.0 out of 10, Wonderful, (1,018 reviews)
"Amazing and beautiful property and would stay again"
United States
Tesheka
The price is AU$236
includes taxes & fees
22 Nov - 23 Nov
Hotel Republic San Diego, Autograph Collection

8. Hotel Indigo San Diego-Gaslamp Quarter by IHG

Hotel Indigo San Diego-Gaslamp Quarter by IHG
4.0 star property
Downtown San Diego
9.0 out of 10, Wonderful, (1,055 reviews)
"Great hotel clean room great Vietnamese coffee"
United States
Angel
The price is AU$314
includes taxes & fees
25 Oct - 26 Oct
Hotel Indigo San Diego-Gaslamp Quarter by IHG

9. Keating Hotel By At Mine Hospitality

Keating Hotel By At Mine Hospitality
2.0 star property
Downtown San Diego
9.4 out of 10, Exceptional, (212 reviews)
"Great location"
United States
Audrey
The price is AU$170
includes taxes & fees
28 Oct - 29 Oct
Keating Hotel By At Mine Hospitality

10. The Bristol Hotel San Diego

The Bristol Hotel San Diego
3.5 star property
Downtown San Diego
8.6 out of 10, Excellent, (1,644 reviews)
"Staff was super friendly and accommodating."
United States
Amie
The price is AU$245
includes taxes & fees
23 Nov - 24 Nov
The Bristol Hotel San Diego
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Mission Beach Hotel Reviews

Frequently asked questions

What's there to see and do in Mission Beach?
Once you've decided where you'll stay, consider what to do for fun during your trip. Major sights and activities around Mission Beach include Mission Bay, San Diego Zoo and Mission Beach. While you're here, make sure you don't miss Marine Corps Recruit Depot, Port of San Diego and Petco Park.

Explore a world of travel with Expedia