A harbor with multiple sailboats and a bridge in the background.

Harbor Island Hotels, San Diego

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Filter by

Property class

Guest rating

Selecting then applying a filter from this group will update the results on a new page

Our top choices for Harbor Island hotels

1. Sheraton San Diego Resort

Sheraton San Diego Resort
4.0 star property
Harbor Island
8.6 out of 10, Excellent, (3,768 reviews)
"Great place to stay"
United States
andrew
The price is AU$301
includes taxes & fees
25 Oct - 26 Oct
Sheraton San Diego Resort

2. Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island
3.5 star property
Harbor Island
8.8 out of 10, Excellent, (1,210 reviews)
"Excellent place to stay"
United States
Amos
The price is AU$269
includes taxes & fees
8 Nov - 9 Nov
Hilton San Diego Airport/Harbor Island

3. Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
0.7 km from Harbor Island
9.2 out of 10, Wonderful, (1,723 reviews)
"Love to stay here, very nice accommodations, quiet, great service, the airport shuttle very convenient."
United States
MANUEL
The price is AU$269
includes taxes & fees
9 Nov - 10 Nov
Hampton Inn & Suites San Diego Airport Liberty Station

4. TownePlace Suites by Marriott San Diego Airport/Liberty Station

TownePlace Suites by Marriott San Diego Airport/Liberty Station
3.0 star property
0.7 km from Harbor Island
8.8 out of 10, Excellent, (1,000 reviews)
"Such a great place to stay"
United States
Chase
The price is AU$289
includes taxes & fees
9 Nov - 10 Nov
TownePlace Suites by Marriott San Diego Airport/Liberty Station

5. Courtyard by Marriott San Diego Airport/Liberty Station

Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
1.1 km from Harbor Island
9.2 out of 10, Wonderful, (1,246 reviews)
"Clean Nice Hotel"
United States
Jaycie Nicole
The price is AU$306
includes taxes & fees
9 Nov - 10 Nov
Courtyard by Marriott San Diego Airport/Liberty Station

6. Best Western Yacht Harbor Hotel

Best Western Yacht Harbor Hotel
2.5 star property
1.8 km from Harbor Island
8.4 out of 10, Very good, (2,088 reviews)
"nice stay"
United States
Falizity
The price is AU$187
includes taxes & fees
9 Nov - 10 Nov
Best Western Yacht Harbor Hotel

7. Homewood Suites by Hilton San Diego Airport/Liberty Station

Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
1 km from Harbor Island
9.4 out of 10, Exceptional, (1,700 reviews)
"Amazing place location and hotel staff were amazing."
United States
Orlyn
The price is AU$301
includes taxes & fees
25 Oct - 26 Oct
Homewood Suites by Hilton San Diego Airport/Liberty Station

8. Wyndham San Diego Bayside

Wyndham San Diego Bayside
4.0 star property
3.3 km from Harbor Island
8.4 out of 10, Very good, (6,341 reviews)
"Wonderful staff and a great location"
United States
Jonathan
The price is AU$278
includes taxes & fees
1 Nov - 2 Nov
Wyndham San Diego Bayside

9. Best Western Plus Island Palms Hotel & Marina

Best Western Plus Island Palms Hotel & Marina
3.0 star property
2.3 km from Harbor Island
9.0 out of 10, Wonderful, (1,620 reviews)
"This hotel is amazing. This was our 2nd time staying there and we will be back."
United States
Sarah
The price is AU$229
includes taxes & fees
3 Nov - 4 Nov
Best Western Plus Island Palms Hotel & Marina

10. Holiday Inn Express San Diego Airport - Old Town by IHG

Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 star property
2.9 km from Harbor Island
9.2 out of 10, Wonderful, (1,091 reviews)
"Love the hotel, the breakfast was good and the staff was exceptional."
United States
Patricia
The price is AU$237
includes taxes & fees
15 Nov - 16 Nov
Holiday Inn Express San Diego Airport - Old Town by IHG

11. Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
2 km from Harbor Island
9.2 out of 10, Wonderful, (4,003 reviews)
"Great location and friendly staff."
United States
Thuan
The price is AU$251
includes taxes & fees
26 Oct - 27 Oct
Bay Club Hotel & Marina

12. Hampton Inn San Diego-Downtown

Hampton Inn San Diego-Downtown
2.5 star property
3.4 km from Harbor Island
8.2 out of 10, Very good, (2,802 reviews)
"Clean rooms, great breakfast"
United States
debbie
The price is AU$244
includes taxes & fees
25 Oct - 26 Oct
Hampton Inn San Diego-Downtown

13. Comfort Inn San Diego Old Town

Comfort Inn San Diego Old Town
2.5 star property
Old Town San Diego, 2.9 km from Harbor Island
8.2 out of 10, Very good, (2,074 reviews)
"Location was good since we were going to the marines base restaurants we’re walking distance and the breakfast fast good."
United States
Paula
The price is AU$181
includes taxes & fees
26 Oct - 27 Oct
Comfort Inn San Diego Old Town

14. Sea Harbor Hotel

Sea Harbor Hotel
2.0 star property
2.1 km from Harbor Island
8.4 out of 10, Very good, (1,091 reviews)
"Staff was excellent with their hospitality and suggestions for local dining. Rooms were very clean, location convenient to the fishing docks and a good value."
United States
Michael
The price is AU$160
includes taxes & fees
10 Nov - 11 Nov
Sea Harbor Hotel

15. Humphreys Half Moon Inn

Humphreys Half Moon Inn
3.5 star property
1.8 km from Harbor Island
9.2 out of 10, Wonderful, (3,126 reviews)
"We had a great stay!"
United States
Svenja
The price is AU$323
includes taxes & fees
10 Nov - 11 Nov
Humphreys Half Moon Inn

16. Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
3.3 km from Harbor Island
7.4 out of 10, Good, (4,213 reviews)
"Great place to stay!"
United States
Nayla
The price is AU$158
includes taxes & fees
26 Oct - 27 Oct
Wyndham Garden San Diego Near SeaWorld

17. Comfort Inn San Diego Airport At The Harbor

Comfort Inn San Diego Airport At The Harbor
3.5 star property
2 km from Harbor Island
7.8 out of 10, Good, (1,723 reviews)
"Very good breakfast."
United States
Luis
The price is AU$167
includes taxes & fees
9 Nov - 10 Nov
Comfort Inn San Diego Airport At The Harbor

18. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Hilton Garden Inn San Diego Old Town/SeaWorld Area
3.0 star property
Old Town San Diego, 3.8 km from Harbor Island
8.8 out of 10, Excellent, (1,536 reviews)
"Nice, clean hotel for a quick stay."
United States
Kristen
The price is AU$182
includes taxes & fees
15 Nov - 16 Nov
Hilton Garden Inn San Diego Old Town/SeaWorld Area

19. Old Town Inn

Old Town Inn
2.5 star property
3 km from Harbor Island
9.0 out of 10, Wonderful, (2,045 reviews)
"Have stayed here before and property is always clean and has good breakfast."
United States
Cindy
The price is AU$226
includes taxes & fees
9 Nov - 10 Nov
Old Town Inn

20. Fairfield Inn & Suites San Diego Old Town

Fairfield Inn & Suites San Diego Old Town
3.0 star property
Old Town San Diego, 3 km from Harbor Island
8.8 out of 10, Excellent, (1,210 reviews)
"Great stay near all the attractions, restaurants."
United States
Marjorie
The price is AU$202
includes taxes & fees
15 Nov - 16 Nov
Fairfield Inn & Suites San Diego Old Town
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Our guide on where to stay in Harbor Island

Find the best Harbor Island areas for the activities you enjoy most.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

Pacific Beach

Get to Pacific Beach after the sun goes down because this is the place to be in San Diego for partying.

Gaslamp Quarter

The historic heart of San Diego has a fascinating history, and today is a thriving hub for food, retail and entertainment.

Mission Beach

If you're spending some time in Mission Beach, Mission Bay and Mission Beach are top sights worth seeing.

Mission Bay

If you're spending some time in Mission Bay, Mission Bay and Ski Beach are top sights worth seeing.

Top Harbor Island Hotel Reviews

Recent Reviews in Harbor Island

Frequently asked questions

What other neighbourhoods are similar to Harbor Island?
While Harbor Island offers a unique blend of waterfront luxury and convenience, Coronado and La Jolla are the most similar neighbourhoods for those seeking a comparable experience.

Coronado, located just across the San Diego Bay, offers a relaxed, upscale island feel with stunning beaches and a charming village atmosphere. The main street, Orange Avenue, is lined with boutique shops, restaurants, and the historic landmark hotel. It's particularly appealing for families due to its calm beaches, bike paths, and the well-maintained Coronado Tidelands Park. Couples will appreciate the romantic sunsets and high-end dining options.

La Jolla, situated north of downtown San Diego, is known for its beautiful coastline, coves, and sophisticated village. Prospect Street and Girard Avenue form the heart of the village, offering luxury shopping, art galleries, and acclaimed restaurants with ocean views. La Jolla Cove is famous for its seals and sea lions and offers excellent opportunities for kayaking and snorkelling. This area is ideal for couples seeking a high-end coastal retreat with natural beauty and fine dining.
What are the best hotels in Harbor Island that travellers recommend?
Two of the best hotels in Harbor Island that receive consistently high recommendations from travellers are the Sheraton San Diego Resort and the Hilton San Diego Airport/Harbor Island.

The 4-star Sheraton San Diego Resort, with an 8.2 rating, is praised for its beautiful and great location, particularly being just 0.2 km from Spanish Landing Park. Guests frequently mention the helpful and great staff, comfortable and clean rooms, and excellent service. The hotel offers amenities such as a poolside bar and couples dining options.

Another highly recommended option is the 3.5-star Hilton San Diego Airport/Harbor Island, which has an 8.8 rating. It is known for its fantastic location, being 1.0 km from Spanish Landing Park, and its friendly and extremely helpful staff. Guests appreciate the comfortable and clean rooms, excellent service, and the convenience of a free airport shuttle.
What are the best family hotels in Harbor Island?
For families visiting Harbor Island, two highly-rated options are the Sheraton San Diego Resort and the Hilton San Diego Airport/Harbor Island.

The 4-star Sheraton San Diego Resort, with a rating of 8.2, is an excellent choice for families. Guests consistently mention the helpful staff, comfortable rooms, and the beautiful location. It features a pool with a gate for added safety, connecting rooms, and offers children's meals and free cribs. It is conveniently located near Spanish Landing Park, just 0.2 km away.

Another great option is the 3.5-star Hilton San Diego Airport/Harbor Island, which has an impressive rating of 8.8. This hotel provides complimentary rollaway beds and cribs, a sofa bed, and connecting rooms, making it ideal for families. Guests frequently praise the friendly and extremely helpful staff, the fantastic location, and the comfortable, clean rooms. The hotel also offers a free airport shuttle and is close to the New Americans Museum, only 1.6 km away.
What are the best spa hotels in Harbor Island?
For a relaxing stay with excellent spa facilities in Harbor Island, the Sheraton San Diego Resort is a superb choice.

This 4-star hotel, with a rating of 8.2, is highly regarded for its comprehensive spa services, including dedicated treatment rooms, great for unwinding. Guests frequently comment on the helpful and great staff, comfortable and clean rooms, and the beautiful and great location. The excellent service and amazing pool also receive high praise, ensuring a rejuvenating experience. The resort also offers couples dining, adding to its appeal for a tranquil getaway.
What hotels in Harbor Island offer free breakfast?
For hotels in Harbor Island that offer complimentary breakfast, the Sheraton San Diego Resort is a superb option.

This 4-star resort, with an excellent rating of 8.2, provides free continental breakfast in its Club Level Lounge. Guests consistently praise the helpful staff, comfortable and clean rooms, and the beautiful location. The resort also features several pools, including an outdoor pool with sun loungers and a poolside bar, superb for relaxation. It is conveniently located near Spanish Landing Park, just 0.2 km away, and the New Americans Museum, 2.0 km away.
What are the top pet-friendly hotels in Harbor Island?
For top pet-friendly hotels in Harbor Island, consider the Sheraton San Diego Resort and the Hilton San Diego Airport/Harbor Island.

The 4-star Sheraton San Diego Resort, with an 8.2 rating, welcomes pets and specifically dogs, providing food and water bowls for their comfort. Guests frequently highlight the helpful staff, comfortable and clean rooms, and the beautiful location near Spanish Landing Park.

Another excellent option is the 3.5-star Hilton San Diego Airport/Harbor Island, rated 8.8. This hotel is also pet-friendly and offers rooms with water, marina, or ocean views. It is conveniently located near Spanish Landing Park and offers a free airport shuttle service, which guests appreciate.
What are the most romantic hotels in Harbor Island for couples?
For couples seeking a romantic stay in Harbor Island, the Sheraton San Diego Resort and the Hilton San Diego Airport/Harbor Island are excellent choices.

The 4-star Sheraton San Diego Resort, with an 8.2 rating, offers a lovely setting for couples. Guests appreciate the beautiful location and the excellent service. This hotel features a selection of pools, including an outdoor pool with sun loungers and umbrellas, and a poolside bar, superb for relaxing together. The hotel also offers specific couples dining options and some rooms have balconies and hot tubs, adding to the romantic experience. It is conveniently located near Spanish Landing Park and offers views of San Diego Bay.

Another great option is the 3.5-star Hilton San Diego Airport/Harbor Island, rated 8.8. This hotel is praised for its fantastic location and comfortable, clean rooms. Many rooms provide stunning views of the ocean, marina, or other waterways, with some even featuring furnished balconies. The staff are frequently described as friendly and extremely helpful, ensuring a pleasant stay. The hotel also provides a free airport shuttle, which is a convenient feature.
What hotels are near San Diego, CA (SAN-San Diego Intl.)?
For hotels near San Diego International Airport, consider the Hilton San Diego Airport/Harbor Island.

This 3.5-star hotel, with an 8.8 rating, is conveniently located just 1.3 kilometres from San Diego International Airport. Guests frequently praise the friendly and extremely helpful staff, as well as the comfortable and clean rooms. The hotel also offers a free airport shuttle, a pool, and complimentary rollaway extra beds and cribs, making it a great option for families. It is also close to Spanish Landing Park, which is just 1.0 kilometre away.
When is the best time to go to Harbor Island?
The best time to visit Harbor Island is during the spring (April to June) and autumn (September to October) months.

These periods offer consistently pleasant weather, with warm temperatures and less humidity than the peak summer months. You'll find fewer crowds compared to summer, making it easier to enjoy the island's attractions and dining experiences without long waits. The ocean temperatures are also very agreeable for swimming and water sports during these times.

For those looking for a relaxing getaway, these shoulder seasons provide a superb balance of good weather and a more tranquil atmosphere. You can enjoy strolls along the waterfront and leisurely meals with scenic views. It's an ideal time for couples seeking a peaceful escape with comfortable conditions for exploring.

If you're interested in sailing or boating, spring and autumn also offer generally calm waters and steady breezes, great for a day out on the bay.
Can I cancel my hotel reservation on Expedia?
Many Expedia hotel reservations are refundable, provided that you cancel before the hotel's cancellation deadline − this is often within 24 to 48 hours of your scheduled arrival. If you have a non-refundable booking, it might still be possible to receive a refund if you cancel it within 24 hours of booking. Be sure to check your booking confirmation for the exact cancellation policy. For maximum flexibility, use our 'Fully refundable property' filter during your search to find the right Harbor Island hotel for you.
How can I save on a hotel booking in Harbor Island with Expedia?
One Key™—Expedia's free travel rewards program—gives you instant access to discounts with Member Prices on Harbor Island hotels. Plus, you'll earn OneKeyCash™* on eligible bookings to use on future trips. Booking an Expedia hotel and flight package is another great way to save, where bundling can result in significant savings. *Excludes taxes and fees. OneKeyCash is not redeemable for cash and can only be used on Expedia and other participating brands.
How much is the nightly rate for a hotel in Harbor Island?
Hotel prices in Harbor Island often vary, but you can find a great deal on Expedia. Different factors affect nightly hotel rates, such as the time of year or the days of the week you want to book. To find the best deals for your stay, be flexible with your dates and sort search results by 'Price: low to high' for our cheapest rates.

Explore a world of travel with Expedia