
Popular airlines from Ninoy Aquino Intl. Airport (MNL) to Kota Kinabalu Intl. Airport (BKI)
- China Southern Airlines
China Southern Airlines
- Scoot
Scoot
- AirAsia Philippines
AirAsia Philippines
- Malaysia Airlines
Malaysia Airlines
- Philippine Airlines
Philippine Airlines
- Jeju Air
Jeju Air
- Royal Brunei Airlines
Royal Brunei Airlines
- Plan, book, fly with confidence
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Cheap Flights from Manila (MNL) to Kota Kinabalu (BKI)
Prices were available within the past 7 days for one-way flights and round trip tickets for the period specified. Prices and availability are subject to change. Additional terms apply.










Find the cheapest month to fly from Manila (MNL) to Kota Kinabalu (BKI)
September is typically the cheapest month to fly
Graph displaying average flight prices per month
Origin airport | Ninoy Aquino Intl. |
Destination airport | Kota Kinabalu Intl. |
Airlines serving | China Southern Airlines, Hahn Air Systems, Jeju Air, Malaysia Airlines, Philippine Airlines, Royal Brunei Airlines, Scoot, Singapore Airlines |
Return price | AU$116 |
Distance | 1090 km |
Average flight time | 2 hours 10 mins |
Your quick guide to flights from Manila to Kota Kinabalu
Pick up great flights from Manila to Kota Kinabalu
With Expedia, you have your pick of flights a day with 20 airlines covering flights from Manila to Kota Kinabalu. Whether you’re on a business trip, a family holiday or a luxury break, just enter your travel dates, hit search then check out your choice of flights. Select from return, one way or multi-city flights, and use the advance search tool if you want a direct or refundable flight. You can narrow your search to show you just your preferred cabin class and airline, too. It’s all easy. You can book direct flights from Manila to Kota Kinabalu that take around hours.
Find cheap flights from Manila to Kota Kinabalu
From the great flight deals with prices currently ranging from AU$117 to AU$617, you can choose to see the cheapest flights first. Generally, you can book the cheapest flights from Manila to Kota Kinabalu around 4 to 6 weeks in advance. If your travel dates are flexible, try to avoid weekends and peak seasons – when you are more likely to grab the lowest prices. Even last minute, there are some impressive deals. The cheapest time to fly to Kota Kinabalu is normally in September.
Reasons to book your flight from Manila to Kota Kinabalu with Expedia
Expedia makes it easy to find, book, and travel, with everything you need all in one place. When you enter your travel details, find fantastic deals just for you on flight tickets from Manila to Kota Kinabalu across all the main airline carriers, so you can save time, dollars, and hassle finding the perfect flight. If you think your plans could change, choose refundable flights so any changes won’t cost you more. Book your flight to Kota Kinabalu right now and, if you join Expedia Rewards, you earn points this time and every time you travel with Expedia.
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Top Routes from Manila
- Manila to Melbourne (MNL - AVV)
- Manila to Cebu (MNL - CEB)
- Manila to Bangkok (MNL - BKK)
- Manila to Caticlan (MNL - MPH)
- Manila to Hong Kong (MNL - HKG)
- Manila to Da Nang (MNL - DAD)
- Manila to Denpasar (MNL - DPS)
- Manila to Tokyo (MNL - NRT)
- Manila to Puerto Princesa (MNL - PPS)
- Manila to Melbourne (MNL - MEL)
- Manila to Siargao (MNL - IAO)
- Manila to Brisbane (MNL - BNE)
Top Routes to Kota Kinabalu
- Auckland to Kota Kinabalu (AKL - BKI)
- Kuala Lumpur to Kota Kinabalu (KUL - BKI)
- Hong Kong to Kota Kinabalu (HKG - BKI)
- Denpasar to Kota Kinabalu (DPS - BKI)
- Adelaide to Kota Kinabalu (ADL - BKI)
- Cairns to Kota Kinabalu (CNS - BKI)
- Kuching to Kota Kinabalu (KCH - BKI)
- Melbourne to Kota Kinabalu (MEL - BKI)
- Seoul to Kota Kinabalu (ICN - BKI)
- Brisbane to Kota Kinabalu (BNE - BKI)
- Penang to Kota Kinabalu (PEN - BKI)
- Singapore to Kota Kinabalu (SIN - BKI)
Top Flight Destinations
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- Flights to Johor Bahru
- Flights to Kota Kinabalu
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Expedia's Latest Trends
- Ninoy Aquino Intl. to Suvarnabhumi Intl.
- Ninoy Aquino Intl. to Changi
- Kingsford Smith Intl. to Ninoy Aquino Intl.
- Ninoy Aquino Intl. to Brisbane
- Ninoy Aquino Intl. to Tullamarine
- Tullamarine to Ninoy Aquino Intl.
- Ninoy Aquino Intl. to Godofredo P. Ramos
- Perth to Ninoy Aquino Intl.
- Coolangatta to Ninoy Aquino Intl.
- Mactan - Cebu Intl. to Ninoy Aquino Intl.
- Ninoy Aquino Intl. to Hong Kong Intl.
- Ninoy Aquino Intl. to Puerto Princesa
- Ninoy Aquino Intl. to Darwin Intl.
- Ninoy Aquino Intl. to Perth
- Ninoy Aquino Intl. to Cairns Intl.
- Ninoy Aquino Intl. to Sayak
- Ninoy Aquino Intl. to Adelaide
- Phuket Intl. to Ninoy Aquino Intl.
- Ninoy Aquino Intl. to El Nido
- Ngurah Rai Intl. to Ninoy Aquino Intl.
- Ninoy Aquino Intl. to Kingsford Smith Intl.
- Darwin Intl. to Ninoy Aquino Intl.
- Ninoy Aquino Intl. to Bohol Intl.
- Ninoy Aquino Intl. to Incheon Intl.
- Ninoy Aquino Intl. to Mactan - Cebu Intl.
- Brisbane to Ninoy Aquino Intl.
- Ninoy Aquino Intl. to Ngurah Rai Intl.
- Adelaide to Ninoy Aquino Intl.
- Ninoy Aquino Intl. to Narita Intl.
- Changi to Ninoy Aquino Intl.