Cheap Hotels & Resorts in San Juan Island from AU$141
Change your mindBook hotels with free cancellation
Be pickySearch almost a million properties worldwide
Check availability on San Juan Island Cheap Hotels
Our top choices for San Juan Island cheap hotels
1. Discovery Inn
Discovery InnFriday Harbor
10.0 out of 10, Exceptional, (70 reviews)
"We enjoyed our stay here. The property is very nice. The host were excellent."
Robert
The price is AU$250
includes taxes & fees
22 Nov - 23 Nov
2. Snug Harbor Resort
Snug Harbor ResortFriday Harbor
9.8 out of 10, Exceptional, (550 reviews)
"Great place to stay. Comfortable cabins with well-appointed kitchens. Views were incredible! Fully enjoyed the firewood and fire pits both evenings - great way to chat with other guests. Didn’t realize until we were checking out how well-stocked the gift shop was with grocery essentials - knowing this sooner would have saved us several trips to town so be sure to check it out!"
Amy
The price is AU$300
includes taxes & fees
12 Nov - 13 Nov
3. Friday Harbor House
Friday Harbor HouseFriday Harbor
9.6 out of 10, Exceptional, (286 reviews)
"Staff and restaurant were exceptionally good"
Randy
The price is AU$482
includes taxes & fees
5 Nov - 6 Nov
4. Tucker House Inn
Tucker House InnFriday Harbor
9.2 out of 10, Wonderful, (310 reviews)
"Will be staying again. Loved it"
Caymin
The price is AU$228
includes taxes & fees
5 Nov - 6 Nov
5. Roche Harbor Resort
Roche Harbor ResortFriday Harbor
9.2 out of 10, Wonderful, (462 reviews)
"Hotel was lovely, highly recommend."
Nicco
The price is AU$395
includes taxes & fees
10 Nov - 11 Nov
6. The Orca Inn
The Orca InnFriday Harbor
8.2 out of 10, Very good, (180 reviews)
"Nice place .. walking distance from the ferry ..staff was super nice will stay again"
Andrew
The price is AU$154
includes taxes & fees
5 Nov - 6 Nov
7. Friday Harbor Suites
Friday Harbor SuitesFriday Harbor
8.6 out of 10, Excellent, (1,000 reviews)
"First time visiting the island and my family and I enjoyed this hotel, exceeded our expectations"
Ana
The price is AU$242
includes taxes & fees
4 Dec - 5 Dec
8. Bird Rock Hotel
Bird Rock HotelFriday Harbor
8.8 out of 10, Excellent, (399 reviews)
"We loved our stay! The room was clean and comfortable and the location was perfect. There were plenty of shops and places to eat nearby, and the air conditioning worked great. It was a beautiful and convenient place to stay for our trip. We would definitely stay here again!"
Vanessa
The price is AU$245
includes taxes & fees
8 Nov - 9 Nov
9. Earthbox Inn & Spa
Earthbox Inn & SpaFriday Harbor
8.8 out of 10, Excellent, (1,000 reviews)
"Great place to stay. Love the spa and amenities."
Troy
The price is AU$348
includes taxes & fees
5 Nov - 6 Nov
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Top San Juan Island Hotel Reviews
Auld Holland Inn
10/10 Excellent
Anacortes Inn
10/10 Excellent
Explore a world of travel with Expedia
- Farmstay in Bellingham
- Lavissh Inn & Suites
- Wingate by Wyndham Bellingham Heritage Inn
- Bellingham Hotels
- Jacobs Landing 1106 View 2 Bedroom Condo
- Blaine Hotels
- Burlington Hotels
- Cabin Rentals in Camano Island
- Sea Glass Hideaway
- Cabin Rentals in Dungeness
- Orcas Island
- Hotels near Ebey's Landing National Historical Reserve
- Best Western Plus Arlington/Marysville
- Romantic LOG CABIN on Stilly River w/ Hot tub! Setup for 2 people only
- Everett Hotels
- Quiet Glamping Barn on a Working Farm with Fire Pit and Open Views
- Apartments in Ferndale
- Ferndale Cottage on Private 20 Acre Farm!
- Ferndale Hotels
- Resort in Ferndale
- Beach house
- Lgbt Welcoming Hotels in Friday Harbor
- Cabin Rentals in Greenbank
- Pet Friendly Hotels in Greenbank
- Hansville Hotels
- Joyce Hotels
- Hotels near Lake Crescent
- Harbor View Haven by Avantstay Private Backyard
- Apartments in Lynden
- Lynden Hotels
- Maple Falls Hotels
- Cabin Rentals in Marysville
- Farmstay in Marysville
- Cheap Hotels in Marysville
- Pet Friendly Hotels in Marysville
- Marysville Hotels
- Farmstay in Mount Vernon
- Swinomish Casino & Lodge
- Mount Vernon Hotels
- Oak Harbor Hotels
- Piedmont Hotels
- Foothills hideaway 3 bedrooms 2 baths 2300 sf
- New Secluded Hillside Retreat on 10 acres with Stunning Views
- Ocean View Tent Site T4
- Perch small · Treehouse
- Reflection Haven
- Olympic Glamping
- Port Gamble Hotels
- Arcadian Grove Studio Loft in the Woods
- Wyndham Hotels in Whidbey Island
- Flights to Bellingham
- Flights to Bow
- Flights to Lynden
- Flights to Mount Vernon
- Flights to San Juan Islands
- Flights to Whidbey Island
- Flights from Bellingham Intl.
- Flights from William R. Fairchild Intl.
- Flights from Orcas Island
- Flights from Freeland
- Flights from Sequim
- Flights from Napa (APC) to Bellingham (BLI)
- Flights from Brisbane (BNE) to Bellingham (BLI)
- Flights from Melbourne (MEL) to Bellingham (BLI)
- Flights from Oakland (OAK) to Bellingham (BLI)
- Flights from Seattle (SEA) to Bellingham (BLI)
- Flights from Sydney (SYD) to Bellingham (BLI)
- Flights from Sydney (SYD) to Port Angeles (CLM)
- Flights from Edmonton (YEG) to Blaine (BWS)
- Flights from Vancouver (YVR) to Bellingham (BLI)