
Search San Juan Island hotels
- Change your mindBook hotels with free cancellation
- Be pickySearch almost a million properties worldwide
Go beyond your typical stay in San Juan Island
Pet friendly
Spa pool
Apartment
Condo
Cottage
Cabin
Family friendly
Waterpark
Check prices for these dates
Tonight
5 Sept - 6 SeptTomorrow
6 Sept - 7 SeptNext weekend
11 Sept - 13 SeptIn two weeks
18 Sept - 20 SeptOur top choices for San Juan Island hotels




1. The Orca Inn
The Orca InnFriday Harbor
Charles
AU$148
includes taxes & fees
1 Oct - 2 Oct




2. Discovery Inn
Discovery InnFriday Harbor
Diego
AU$253
includes taxes & fees
4 Oct - 5 Oct




3. Friday Harbor Suites
Friday Harbor SuitesFriday Harbor
Jennifer
AU$266
includes taxes & fees
4 Oct - 5 Oct




4. Earthbox Inn & Spa
Earthbox Inn & SpaFriday Harbor
Nicole
AU$353
includes taxes & fees
1 Oct - 2 Oct




5. Trumpeter Inn
Trumpeter InnFriday Harbor
Angela
AU$391
includes taxes & fees
8 Sept - 9 Sept




6. Bird Rock Hotel
Bird Rock HotelFriday Harbor
Vanessa
AU$246
includes taxes & fees
1 Oct - 2 Oct




7. Snug Harbor Resort
Snug Harbor ResortFriday Harbor
Sarah
AU$484
includes taxes & fees
6 Oct - 7 Oct




8. Roche Harbor Resort
Roche Harbor ResortFriday Harbor
Nicco
AU$381
includes taxes & fees
28 Sept - 29 Sept




9. Tucker House Inn
Tucker House InnFriday Harbor
ZACHARY
AU$312
includes taxes & fees
8 Sept - 9 Sept




10. Friday Harbor House
Friday Harbor HouseFriday Harbor
Robert
AU$607
includes taxes & fees
5 Oct - 6 Oct




11. Friday Harbor Grand B&B
Friday Harbor Grand B&BFriday Harbor
Andrew
AU$535
includes taxes & fees
10 Sept - 11 Sept




12. Saturn's Return
Saturn's ReturnFriday Harbor
Margaret
AU$495
includes taxes & fees
5 Oct - 6 Oct




13. Lopez Islander Resort
Lopez Islander ResortLopez Island
Diane
AU$274
includes taxes & fees
1 Oct - 2 Oct




14. The Edenwild Boutique Inn
The Edenwild Boutique InnLopez Island
Frances
AU$280
includes taxes & fees
8 Sept - 9 Sept




15. Anacortes Ship Harbor Inn
Anacortes Ship Harbor InnAnacortes
Jim
AU$151
includes taxes & fees
1 Oct - 2 Oct




16. Deer Harbor Inn
Deer Harbor InnDeer Harbor
Nemo
AU$347
includes taxes & fees
17 Sept - 18 Sept




18. Rosario Resort
Rosario ResortEastsound
Casey
AU$264
includes taxes & fees
4 Oct - 5 Oct




19. Kangaroo House B&B on Orcas Island
Kangaroo House B&B on Orcas IslandEastsound
Carla
AU$384
includes taxes & fees
20 Sept - 21 Sept




20. West Beach Resort
West Beach ResortEastsound
lorrie
AU$420
includes taxes & fees
28 Sept - 29 Sept
Stay near popular San Juan Island attractions

Roche Harbor Marina
9.4/10 (332 reviews)
Explore the waterfront in Roche Harbor with a trip to Roche Harbor Marina. While you're in the area, stroll along the seaside.

Lime Kiln Point State Park
9.6/10 (317 reviews)
Also known as Whale Watch Park, this diving site is one of the best places in the world to view wild orca pods from the shore.

San Juan Island National Historic Park
9.4/10 (184 reviews)
You can learn about the history of Friday Harbor when you stop by San Juan Island National Historic Park. While you're in the area, stroll along the waterfront.

San Juan County Park
9.0/10 (87 reviews)
A hotspot for kayakers, this scenic and diverse campsite is the perfect retreat for both those wanting to relax and adventurists.

Cape San Juan
9.4/10 (94 reviews)
Visit the Cattle Point Lighthouse and see if you can spot some seals at the southern tip of San Juan Island.
San Juan Islands Sculpture Park
8.8/10 (144 reviews)
Explore the great outdoors at San Juan Islands Sculpture Park, a lovely green space in Roche Harbor. While you're in the area, stroll along the waterfront.
Whale Museum
8.8/10 (89 reviews)
You can spend an afternoon studying the exhibits at Whale Museum during your trip to Friday Harbor. While you're in the area, stroll along the waterfront.
San Juan Islands Museum of Art
8.4/10 (22 reviews)
You can spend an afternoon exploring the galleries in San Juan Islands Museum of Art during your travels in Friday Harbor. While you're in the area, stroll along the waterfront.
Learn more about San Juan Island
San Juan Island entices visitors with its quaint harbor towns, forest trails and the chance to see a range of wildlife, including endangered orcas.
See all hotels in San Juan Island
Top San Juan Island Hotel Reviews
Recent Reviews in San Juan Island
The Orca Inn
8/10 Good
"Owners very accommodating, let us stash our luggage there since we arrived before check-in. Convenient location a short hike up the hill from the ferry. Rooms very small and basic, more of a place to sleep than hang out. My wife said to think of it as camping, and that helped, but in that case maybe knock 20 or 30 dollars off the price. We found a large spider in the shower which we took to live with a nice family in the country. There was a sign saying to moderate hot water usage, as each room has its own on-demand water heater or something like that, but we didn’t encounter any issues as we showered together. We had lots of water left at the end of each shower…and we enjoy our showers. Shower together! It’s good for the environment, and it’s good for a marriage. The walls are indeed thin as others have mentioned, but we didn’t have any real issue with this except for the morning someone at the nearby market decided to operate a forklift at 5am. Most seemed to do as we did and just use it as a place to sleep, and we were there over a weekend. All in all, recommended as a very basic but more than adequate place to sleep at the end of your day’s adventures. The owners clearly work very hard and are focused on making this a success."
Bird Rock Hotel
10/10 Excellent
"Very accommodating TV in bedroom didn’t work Close to town Would stay again"
Earthbox Inn & Spa
8/10 Good
"Nice place to stay. Great location. The only slight negative was we were right next to the pet yard and had a very noisy dog next to us. Not really a complaint though, we knew it was a pet friendly property."
Friday Harbor House
10/10 Excellent
"Great hotel. Great staff."
Discovery Inn
10/10 Excellent
"Well appointed and friendly hotel. Conveniently located, minutes from the main commercial area of Friday Harbor. Alexis (owner) is very friendly and hospitable. Highly recommended."
Inn to the Woods B&B
10/10 Excellent
"It was such a cute place. My husband and I enjoyed our stay there. It is tucked in the woods as the name suggests. The breakfast was very good. We had gluten free lemon blueberry pancakes and they were delicious."
Trumpeter Inn
10/10 Excellent
"The place was beautiful and quite. Claudia was an amazing host."
Beach house, heated pool, hot tub, private beach, shared dock
8/10 Good
"House and amenities were fantastic for our purposes. The grandchildren played in the pool at least 3 hours/ day, we all were able to go kayaking daily, the beach was a constant focus of study and discovery. The 4 grands, ages 5-8 pushed each other on the rope swing. The adults walked, rode bikes, ran on surrounding roads in a beautiful setting. House was perfect for 4 families, each having their own space. The unique bunk beds were enjoyed by the littles. We were blessed with sunny days, high of 74 degrees daily for the entire week. The managers were close by to take care of the pool daily. They were responsive to our concerns, and we felt very secure. The big table fit our group of 12 comfortably for regular meals. The sunrises and sunsets were spectacular! We spent hours watching bald eagles, herons, kingfishers, and harbor seals. Bring your binoculars! Thanks for setting for fantastic adventures"
Neil Bay Waterfront Family And Pet Friendly Property!<br>PCUP00-13-0010
10/10 Excellent
"We had a wonderful time at this lovely place, quiet and cozy, the lodge is well equipped, the beach is beautiful, we’re so enjoyed watching the sunset, definitely want to come back!"
More cheap accommodation in San Juan Island

The Orca Inn
770 Mullis St Friday Harbor WA
AU$148
1 Oct - 2 Oct
includes taxes & fees
8.4/10 Very good! (117 reviews)

Auld Holland Inn
33575 State Route 20 Oak Harbor WA
AU$168
1 Oct - 2 Oct
includes taxes & fees
8.2/10 Very good! (1,001 reviews)

Coachman Inn & Suites
32959 Highway 20 Oak Harbor WA
AU$201
6 Oct - 7 Oct
includes taxes & fees

Anacortes Inn
3006 Commercial Ave Anacortes WA
AU$217
8 Sept - 9 Sept
includes taxes & fees

The Marina Inn
3300 Commercial Ave Anacortes WA
AU$241
6 Sept - 7 Sept
includes taxes & fees
9.6/10 Exceptional! (1,008 reviews)
Explore a world of travel with Expedia
- Farmstay in Bellingham
- Lavissh Inn & Suites
- Wingate by Wyndham Bellingham Heritage Inn
- Bellingham Hotels
- Jacobs Landing 1106 View 2 Bedroom Condo
- Blaine Hotels
- Hotels near Boeing Everett Factory
- Burlington Hotels
- Cabin Rentals in Camano Island
- Sea Glass Hideaway
- Clallam Bay Hotels
- Cabin Rentals in Dungeness
- Orcas Island
- Hotels near Ebey's Landing National Historical Reserve
- Best Western Plus Arlington/Marysville
- Romantic LOG CABIN on Stilly River w/ Hot tub! Setup for 2 people only
- Everett Hotels
- Quiet Glamping Barn on a Working Farm with Fire Pit and Open Views
- Apartments in Ferndale
- Ferndale Cottage on Private 20 Acre Farm!
- Ferndale Hotels
- Resort in Ferndale
- Beach house
- Lgbt Welcoming Hotels in Friday Harbor
- Cabin Rentals in Greenbank
- Pet Friendly Hotels in Greenbank
- Hansville Hotels
- Joyce Hotels
- Hotels near Lake Crescent
- Harbor View Haven by Avantstay Private Backyard
- Apartments in Lynden
- Lynden Hotels
- Maple Falls Hotels
- Cabin Rentals in Marysville
- Pet Friendly Hotels in Marysville
- Marysville Hotels
- Farmstay in Mount Vernon
- Swinomish Casino & Lodge
- Mount Vernon Hotels
- Oak Harbor Hotels
- Piedmont Hotels
- Foothills hideaway 3 bedrooms 2 baths 2300 sf
- New Secluded Hillside Retreat on 10 acres with Stunning Views
- Ocean View Tent Site T4
- Perch small · Treehouse
- Reflection Haven
- Olympic Glamping
- Port Gamble Hotels
- Hotels near Seattle Paine Field Intl. Airport
- Arcadian Grove Studio Loft in the Woods
- Wyndham Hotels in Whidbey Island
- Flights to Bellingham
- Flights to Bow
- Flights to Lynden
- Flights to Mount Vernon
- Flights to San Juan Islands
- Flights to Whidbey Island
- Flights from Bellingham Intl.
- Flights from William R. Fairchild Intl.
- Flights from Orcas Island
- Flights from Freeland
- Flights from Sequim
- Flights from Napa (APC) to Bellingham (BLI)
- Flights from Brisbane (BNE) to Bellingham (BLI)
- Flights from Melbourne (MEL) to Bellingham (BLI)
- Flights from Oakland (OAK) to Bellingham (BLI)
- Flights from Seattle (SEA) to Bellingham (BLI)
- Flights from Sydney (SYD) to Bellingham (BLI)
- Flights from Sydney (SYD) to Port Angeles (CLM)
- Flights from Edmonton (YEG) to Blaine (BWS)
- Flights from Vancouver (YVR) to Bellingham (BLI)





