Boutique Hotels & Resorts in San Juan Island from AU$154
Change your mindBook hotels with free cancellation
Be pickySearch almost a million properties worldwide
Check availability on San Juan Island Boutique Hotels
Tonight
Tomorrow
Next weekend
In two weeks
No exact matches found, but these alternatives could be just right
Recommended hotels in San Juan Island
8.4 out of 10, Very good, (29 reviews)
"Everything was awesome clean small but that’s what I expected and very nice staff"
Ashley
The price is AU$201
includes taxes & fees
6 July - 7 July
10.0 out of 10, Exceptional, (262 reviews)
"This was our first experience at a bed & breakfast, and it was a great one! We would book again."
Rene
The price is AU$466
includes taxes & fees
6 July - 7 July
10.0 out of 10, Exceptional, (18 reviews)
"Excellent front desk, very helpful."
Thomas
The price is AU$422
includes taxes & fees
9 July - 10 July
9.2 out of 10, Wonderful, (443 reviews)
"We had a wonderful stay the room was clean and inviting "
Steve
8.8 out of 10, Excellent, (376 reviews)
"Very nice and helpful staff! I love the location of this hotel it is so convenient. "
XIN
The price is AU$343
includes taxes & fees
9 July - 10 July
8.6 out of 10, Excellent, (1,004 reviews)
"Conveniently located, spacious rooms, good facilities make this hotel a better option to stay in Friday Harbor."
paresh
The price is AU$387
includes taxes & fees
5 July - 6 July
9.8 out of 10, Exceptional, (524 reviews)
"Serene and cozy resort."
Toshimasa
The price is AU$847
includes taxes & fees
1 Aug - 2 Aug
8.8 out of 10, Excellent, (1,002 reviews)
"Clean, nice staff , excellent location"
Karen
The price is AU$470
includes taxes & fees
26 July - 27 July
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Top San Juan Island Hotel Reviews
Bird Rock Hotel
8/10 Good
Explore a world of travel with Expedia
- Farmstay in Bellingham
- Lavissh Inn & Suites
- Wingate by Wyndham Bellingham Heritage Inn
- Bellingham Hotels
- Jacobs Landing 1106 View 2 Bedroom Condo
- Blaine Hotels
- Burlington Hotels
- Cabin Rentals in Camano Island
- Sea Glass Hideaway
- Cabin Rentals in Dungeness
- Orcas Island
- Hotels near Ebey's Landing National Historical Reserve
- Best Western Plus Arlington/Marysville
- Romantic LOG CABIN on Stilly River w/ Hot tub! Setup for 2 people only
- Everett Hotels
- Quiet Glamping Barn on a Working Farm with Fire Pit and Open Views
- Apartments in Ferndale
- Ferndale Cottage on Private 20 Acre Farm!
- Ferndale Hotels
- Resort in Ferndale
- Beach house
- Lgbt Welcoming Hotels in Friday Harbor
- Cabin Rentals in Greenbank
- Pet Friendly Hotels in Greenbank
- Hansville Hotels
- Joyce Hotels
- Hotels near Lake Crescent
- Harbor View Haven by Avantstay Private Backyard
- Apartments in Lynden
- Lynden Hotels
- Maple Falls Hotels
- Cabin Rentals in Marysville
- Farmstay in Marysville
- Cheap Hotels in Marysville
- Pet Friendly Hotels in Marysville
- Marysville Hotels
- Farmstay in Mount Vernon
- Swinomish Casino & Lodge
- Mount Vernon Hotels
- Oak Harbor Hotels
- Piedmont Hotels
- Foothills hideaway 3 bedrooms 2 baths 2300 sf
- New Secluded Hillside Retreat on 10 acres with Stunning Views
- Ocean View Tent Site T4
- Perch small · Treehouse
- Reflection Haven
- Olympic Glamping
- Port Gamble Hotels
- Arcadian Grove Studio Loft in the Woods
- Wyndham Hotels in Whidbey Island
- Flights to Bellingham
- Flights to Bow
- Flights to Lynden
- Flights to Mount Vernon
- Flights to San Juan Islands
- Flights to Whidbey Island
- Flights from Bellingham Intl.
- Flights from William R. Fairchild Intl.
- Flights from Orcas Island
- Flights from Freeland
- Flights from Sequim
- Flights from Napa (APC) to Bellingham (BLI)
- Flights from Brisbane (BNE) to Bellingham (BLI)
- Flights from Melbourne (MEL) to Bellingham (BLI)
- Flights from Oakland (OAK) to Bellingham (BLI)
- Flights from Seattle (SEA) to Bellingham (BLI)
- Flights from Sydney (SYD) to Bellingham (BLI)
- Flights from Sydney (SYD) to Port Angeles (CLM)
- Flights from Edmonton (YEG) to Blaine (BWS)
- Flights from Vancouver (YVR) to Bellingham (BLI)