Mission Bay Hotels, San Diego

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Mission Bay hotels

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,337 reviews)
"Great place for our family getaway! Loved the S’mores on the beach! "
United States
Dani
The price is AU$341
includes taxes & fees
2 Feb - 3 Feb
San Diego Mission Bay Resort

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (3,996 reviews)
"We had a wonderful stay!"
United States
Megan
The price is AU$308
includes taxes & fees
19 Jan - 20 Jan
The Dana on Mission Bay

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.6 out of 10, Excellent, (2,369 reviews)
"Great facility and amenities. We look forward to taking our family back again. "
United States
Andy
The price is AU$319
includes taxes & fees
19 Jan - 20 Jan
Paradise Point Resort & Spa

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,587 reviews)
"Staff was extremely friendly and helpful.. from the valet to front desk and restaurant staff. Rooms were comfortable, spacious and clean. It was a great stay and conveniently close to SeaWorld. "
United States
Brandon
The price is AU$335
includes taxes & fees
25 Jan - 26 Jan
Hyatt Regency Mission Bay Spa and Marina

Wyndham San Diego Bayside

Wyndham San Diego Bayside
4.0 star property
8 km from Mission Bay
8.4 out of 10, Very good, (6,005 reviews)
"Perfect location for cruise"
United States
blasimar
The price is AU$287
includes taxes & fees
20 Jan - 21 Jan
Wyndham San Diego Bayside

The Bristol Hotel San Diego

The Bristol Hotel San Diego
3.5 star property
8.7 km from Mission Bay
8.6 out of 10, Excellent, (1,470 reviews)
"Newly remodeled rooms, clean and wonderful staff. "
United States
Zoe
The price is AU$651
includes taxes & fees
9 Feb - 10 Feb
The Bristol Hotel San Diego

Hard Rock Hotel San Diego

Hard Rock Hotel San Diego
4.0 star property
Gaslamp Quarter, 9.7 km from Mission Bay
9.0 out of 10, Wonderful, (3,233 reviews)
"2nd stay here & it was wonderful. "
United States
Erica
The price is AU$370
includes taxes & fees
19 Jan - 20 Jan
Hard Rock Hotel San Diego

Loews Coronado Bay Resort

Loews Coronado Bay Resort
4.0 star property
18.1 km from Mission Bay
8.8 out of 10, Excellent, (1,065 reviews)
"The staff and amenities were spectacular. "
United States
Andrew
The price is AU$387
includes taxes & fees
8 Feb - 9 Feb
Loews Coronado Bay Resort

The DEXTRO Little Italy, BW Premier Collection

The DEXTRO Little Italy, BW Premier Collection
3.0 star property
8.2 km from Mission Bay
9.0 out of 10, Wonderful, (919 reviews)
"Great stay. Would definitely stay again."
United States
Zoraima
The price is AU$137
includes taxes & fees
19 Jan - 20 Jan
The DEXTRO Little Italy, BW Premier Collection

Residence Inn by Marriott San Diego Downtown/Gaslamp Quarter

Residence Inn by Marriott San Diego Downtown/Gaslamp Quarter
3.0 star property
Gaslamp Quarter, 9.6 km from Mission Bay
9.0 out of 10, Wonderful, (1,250 reviews)
"Friendly staff, great location, excellent value overall "
United States
Maryann
The price is AU$276
includes taxes & fees
20 Jan - 21 Jan
Residence Inn by Marriott San Diego Downtown/Gaslamp Quarter

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,906 reviews)
"The staff was very nice and great location"
United States
Curtis
The price is AU$126
includes taxes & fees
25 Jan - 26 Jan
GreenTree Inn San Diego Mission Bay

Manchester Grand Hyatt San Diego

Manchester Grand Hyatt San Diego
4.0 star property
Marina District, 9 km from Mission Bay
9.0 out of 10, Wonderful, (2,889 reviews)
"Excellent stay...wonderful staff"
United States
Michelle
The price is AU$427
includes taxes & fees
22 Jan - 23 Jan
Manchester Grand Hyatt San Diego

Palihotel San Diego Gaslamp Quarter

Palihotel San Diego Gaslamp Quarter
4.0 star property
Gaslamp Quarter, 9.1 km from Mission Bay
8.6 out of 10, Excellent, (2,186 reviews)
"Excellent location, wonderful staff."
United States
phuc
The price is AU$198
includes taxes & fees
21 Jan - 22 Jan
Palihotel San Diego Gaslamp Quarter

The Encinitan Hotel & Suites

The Encinitan Hotel & Suites
3.0 star property
30.9 km from Mission Bay
8.2 out of 10, Very good, (1,327 reviews)
"Always a great stay!"
United States
Edith
The Encinitan Hotel & Suites

DoubleTree by Hilton San Diego - Del Mar

DoubleTree by Hilton San Diego - Del Mar
4.0 star property
Carmel Valley, 17.8 km from Mission Bay
8.4 out of 10, Very good, (1,980 reviews)
"Was very good stay."
United States
Ludmila
The price is AU$215
includes taxes & fees
2 Feb - 3 Feb
DoubleTree by Hilton San Diego - Del Mar

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3.4 km from Mission Bay
9.4 out of 10, Exceptional, (1,724 reviews)
"Great location with easy access to the beach and everything with walking distance."
United States
Jeremy
The price is AU$315
includes taxes & fees
19 Jan - 20 Jan
The Wayfarer San Diego

Staypineapple, Hotel Z, Gaslamp San Diego

Staypineapple, Hotel Z, Gaslamp San Diego
3.0 star property
Gaslamp Quarter, 9.4 km from Mission Bay
9.4 out of 10, Exceptional, (1,009 reviews)
"Outstanding hotel"
United States
Lee
The price is AU$198
includes taxes & fees
21 Jan - 22 Jan
Staypineapple, Hotel Z, Gaslamp San Diego

Courtyard by Marriott San Diego Airport/Liberty Station

Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
5 km from Mission Bay
9.2 out of 10, Wonderful, (1,341 reviews)
"Lovely place to stay!"
United States
Helga
The price is AU$289
includes taxes & fees
23 Jan - 24 Jan
Courtyard by Marriott San Diego Airport/Liberty Station

Hampton Inn San Diego/Mission Valley

Hampton Inn San Diego/Mission Valley
2.5 star property
4.3 km from Mission Bay
8.6 out of 10, Excellent, (1,368 reviews)
"Great breakfast-comfortable rooms-helpful staff-great location for events"
United States
bill
The price is AU$166
includes taxes & fees
25 Jan - 26 Jan
Hampton Inn San Diego/Mission Valley

The Sofia Hotel

The Sofia Hotel
3.5 star property
8.7 km from Mission Bay
8.6 out of 10, Excellent, (1,693 reviews)
"Really pretty hotel and the staff was really friendly"
United States
Yamel
The price is AU$233
includes taxes & fees
19 Jan - 20 Jan
The Sofia Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Our guide on where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

Gaslamp Quarter

The historic heart of San Diego has a fascinating history, and today is a thriving hub for food, retail and entertainment.

Pacific Beach

Get to Pacific Beach after the sun goes down because this is the place to be in San Diego for partying.

Mission Beach

If you're spending some time in Mission Beach, Mission Bay and Mission Beach are top sights worth seeing.

Ocean Beach

With a secluded sunbathing beach, swimming-only beach, special surf beach, volleyball beach and dog beach, San Diego’s “OB” sure takes beaches seriously.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
You'll be sure to have fun exploring San Diego's Mission Bay neighbourhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighbourhood.
What's a favourite hotel to stay in Mission Bay?
Based on Expedia customer reviews, Paradise Point Resort & Spa is the highest ranked property in Mission Bay. This resort offers a marina and 5 outdoor pools. Other favourite options in the area include The Dana on Mission Bay and San Diego Mission Bay Resort.
How many hotels should I expect to find in the Mission Bay area?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodation options to choose from.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes, you'll find most room reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might be able to still cancel and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then you can use the "fully refundable" filter to view top deals in Mission Bay.
What is there to do around this San Diego neighbourhood?
Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or Mission Bay Golf Course while you're in the neighbourhood. Mission Beach and Hotel Circle are some popular places to visit in the area around Mission Bay. When you're sightseeing in San Diego, North Cove Beach and Bahia Point Beach are also worth a stop.