Mission Bay Hotels, San Diego

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Our top choices for Mission Bay hotels

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.6 out of 10, Excellent, (1,461 reviews)
"Great resort!"
United States
Jean-Michelle
The price is AU$572
includes taxes & fees
6 July - 7 July
San Diego Mission Bay Resort

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.8 out of 10, Excellent, (2,633 reviews)
"Beautiful Vacation spot."
United States
Daniel
The price is AU$485
includes taxes & fees
14 June - 15 June
Paradise Point Resort & Spa

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,629 reviews)
"Amazing place!"
United States
Yesenia
The price is AU$422
includes taxes & fees
14 June - 15 June
Hyatt Regency Mission Bay Spa and Marina

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (4,378 reviews)
"NICE PLACE TO STAY"
United States
René
The price is AU$425
includes taxes & fees
15 June - 16 June
The Dana on Mission Bay

Best Western Plus Marina Gateway Hotel

Best Western Plus Marina Gateway Hotel
3.5 star property
16.7 km from Mission Bay
9.2 out of 10, Wonderful, (3,867 reviews)
"Great stay"
United States
Cameron
The price is AU$233
includes taxes & fees
11 June - 12 June
Best Western Plus Marina Gateway Hotel

Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
5.3 km from Mission Bay
9.2 out of 10, Wonderful, (1,725 reviews)
"Good location, clean room and nice staff. A great place to stay."
United States
Patricia
The price is AU$276
includes taxes & fees
28 June - 29 June
Hampton Inn & Suites San Diego Airport Liberty Station

Lafayette Hotel & Club

Lafayette Hotel & Club
4.0 star property
8.1 km from Mission Bay
9.4 out of 10, Exceptional, (1,687 reviews)
"Lovely hotel, very aesthetic place"
United States
Roxana
The price is AU$401
includes taxes & fees
30 June - 1 July
Lafayette Hotel & Club

Best Western Americana Inn

Best Western Americana Inn
2.5 star property
28.6 km from Mission Bay
8.8 out of 10, Excellent, (1,294 reviews)
"Everything was very pleasant,the place was super clean, and the breakfast was delicious👍"
United States
Nancy
The price is AU$195
includes taxes & fees
5 July - 6 July
Best Western Americana Inn

Holiday Inn Express San Diego South - Chula Vista by IHG

Holiday Inn Express San Diego South - Chula Vista by IHG
2.5 star property
19.3 km from Mission Bay
9.4 out of 10, Exceptional, (1,214 reviews)
"Very nice place to stay"
United States
Lingzhi
The price is AU$241
includes taxes & fees
7 June - 8 June
Holiday Inn Express San Diego South - Chula Vista by IHG

Sheraton San Diego Resort

Sheraton San Diego Resort
4.0 star property
6 km from Mission Bay
8.4 out of 10, Very good, (3,546 reviews)
"My family and I truly enjoyed our stay."
United States
Beverly A
The price is AU$327
includes taxes & fees
5 July - 6 July
Sheraton San Diego Resort

Ayres Hotel San Diego South - Chula Vista

Ayres Hotel San Diego South - Chula Vista
3.0 star property
29.6 km from Mission Bay
9.8 out of 10, Exceptional, (1,103 reviews)
"Nice place good food for breakfast 👍"
United States
Paul
The price is AU$323
includes taxes & fees
7 June - 8 June
Ayres Hotel San Diego South - Chula Vista

SpringHill Suites by Marriott San Diego Rancho Bernardo/Scripps Poway

SpringHill Suites by Marriott San Diego Rancho Bernardo/Scripps Poway
3.0 star property
20.8 km from Mission Bay
8.8 out of 10, Excellent, (1,203 reviews)
"Great service and clean rooms. Happy with location and stay."
United States
Maria
The price is AU$272
includes taxes & fees
7 June - 8 June
SpringHill Suites by Marriott San Diego Rancho Bernardo/Scripps Poway

Marriott Marquis San Diego Marina

Marriott Marquis San Diego Marina
4.0 star property
9.3 km from Mission Bay
9.2 out of 10, Wonderful, (2,164 reviews)
"Excellent stay!"
United States
Joyce
The price is AU$572
includes taxes & fees
12 June - 13 June
Marriott Marquis San Diego Marina

Comfort Inn Chula Vista San Diego South

Comfort Inn Chula Vista San Diego South
2.5 star property
20.6 km from Mission Bay
8.2 out of 10, Very good, (1,533 reviews)
"Laundry room was extremely clean breakfast pretty nice staff was excellent "
United States
Victoria
The price is AU$187
includes taxes & fees
7 June - 8 June
Comfort Inn Chula Vista San Diego South

Ramada by Wyndham San Diego Poway Miramar

Ramada by Wyndham San Diego Poway Miramar
2.0 star property
24.7 km from Mission Bay
7.2 out of 10, Good, (1,014 reviews)
"Nice place to stay."
United States
Jacquie
The price is AU$198
includes taxes & fees
7 June - 8 June
Ramada by Wyndham San Diego Poway Miramar

Old Town Inn

Old Town Inn
2.5 star property
3.5 km from Mission Bay
9.2 out of 10, Wonderful, (1,885 reviews)
"Breakfast was good, rooms were decent."
United States
Andrea
The price is AU$269
includes taxes & fees
8 June - 9 June
Old Town Inn

Hampton Inn Cardiff Beach Encinitas, CA Near Del Mar

Hampton Inn Cardiff Beach Encinitas, CA Near Del Mar
3.0 star property
28.3 km from Mission Bay
9.2 out of 10, Wonderful, (1,031 reviews)
"Great location and comfortable beds!"
United States
Michael
The price is AU$254
includes taxes & fees
7 June - 8 June
Hampton Inn Cardiff Beach Encinitas, CA Near Del Mar

Best Western San Diego/Miramar Hotel

Best Western San Diego/Miramar Hotel
2.5 star property
16.1 km from Mission Bay
8.0 out of 10, Very good, (1,371 reviews)
"Great staff and comfortable room."
United States
Angela
The price is AU$187
includes taxes & fees
7 June - 8 June
Best Western San Diego/Miramar Hotel

Holiday Inn Express San Diego Airport - Old Town by IHG

Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 star property
4.8 km from Mission Bay
9.2 out of 10, Wonderful, (1,071 reviews)
"Staff was so great nice rooms really great stay"
United States
Amelia
The price is AU$258
includes taxes & fees
7 June - 8 June
Holiday Inn Express San Diego Airport - Old Town by IHG

Best Western Plus Hacienda Hotel Old Town

Best Western Plus Hacienda Hotel Old Town
3.0 star property
Old Town San Diego, 3.7 km from Mission Bay
8.4 out of 10, Very good, (2,047 reviews)
"Great place"
United States
Mark
The price is AU$205
includes taxes & fees
7 June - 8 June
Best Western Plus Hacienda Hotel Old Town
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Our guide on where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and USS Midway Museum are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

Pacific Beach

Get to Pacific Beach after the sun goes down because this is the place to be in San Diego for partying.

Mission Beach

If you're spending some time in Mission Beach, Mission Beach and Mission Bay are top sights worth seeing.

Gaslamp Quarter

The historic heart of San Diego has a fascinating history, and today is a thriving hub for food, retail and entertainment.

Ocean Beach

With a secluded sunbathing beach, swimming-only beach, special surf beach, volleyball beach and dog beach, San Diego’s “OB” sure takes beaches seriously.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
You'll be sure to have fun exploring San Diego's Mission Bay neighbourhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighbourhood.
What's a favourite hotel to stay in Mission Bay?
Based on our traveller data, Paradise Point Resort & Spa is one of the top choices for your stay in Mission Bay. This resort offers a marina and 5 outdoor pools. Other good options for your stay in the neighbourhood include The Dana on Mission Bay and San Diego Mission Bay Resort.
How many hotels should I expect to find in the Mission Bay area?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodation options to choose from.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes, you'll find most room reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might be able to still cancel and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then you can use the "fully refundable" filter to view top deals in Mission Bay.
What is there to do around this San Diego neighbourhood?
Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or North Cove Beach while you're in the neighbourhood. Mission Beach and Hotel Circle are some popular places to visit in the area around Mission Bay. When you're sightseeing in San Diego, Bahia Point Beach and Bay City Brewing Co. are also worth a stop.