Southeast Minnesota Hotel & Accommodation Deals 2026 from AU$93 - Compare prices by date

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Go beyond your typical stay in Southeast Minnesota

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Our top choices for Southeast Minnesota hotels

A modern dining area with high tables, chairs, and pendant lighting.

A hotel room with two beds, a desk with a computer, a chair, and a window with a view.

A swimming pool with a tiled deck, sun loungers, and a lifeguard chair.

A reception desk with a large digital screen displaying a cityscape and the word "happy."

1. Hampton Inn & Suites Rochester-North

Rochester

Dr. Tim

AU$164

includes taxes & fees

27 Sept - 28 Sept

An outdoor seating area with a fire feature, blue cushioned chairs, and a modern building with large windows in the background.

A modern dining area with round tables and chairs, a large painting on the wall, and a flat-screen TV mounted above a geometric-patterned wall.

A modern indoor pool area with lounge chairs and a pool.

A modern Hyatt House hotel with a prominent 'Hyatt House' sign, multiple floors, and a parking garage.

2. Hyatt House Rochester/Mayo Clinic Area

Downtown Rochester

Mary Jo

AU$189

includes taxes & fees

2 Oct - 3 Oct

An outdoor patio area with a concrete floor, wooden fence, and string lights.

A Fairfield Inn & Suites hotel with a modern design, featuring a prominent entrance and a parking area.

A breakfast bar with a wooden counter, a coffee machine, and a refrigerator.

3. Fairfield Inn & Suites Rochester Mayo Clinic Area/St. Marys

Kutzky Park

Jon

AU$178

includes taxes & fees

12 Sept - 13 Sept

A modern lobby with a reception desk, a green sofa, and a black spherical table.

An indoor dining area with wooden ceiling beams, large windows, and modern furniture.

A modern hotel with a prominent 'Hotel Indigo' sign, a 'Crave Drink' restaurant, and a well-lit facade.

A modern bar area with a central island, bar stools, and hanging spherical light fixtures.

4. Hotel Indigo Rochester – Mayo Clinic Area by IHG

Downtown Rochester

Kyle

AU$165

includes taxes & fees

11 Sept - 12 Sept

A hotel room with a large bed, a desk with a chair, a window with a view of the outdoors, and two bedside lamps.

An indoor swimming pool with a checkered tile wall, a door labeled 'Mechanical Room,' and a window with a view outside.

A reception desk with a wooden finish, a large illuminated 'C' sign, and a modern light fixture on the ceiling.

A conference room with round tables and chairs, white walls, and a carpeted floor.

5. Comfort Inn & Suites Rochester South Mayo Clinic

Rochester

Richard

AU$130

includes taxes & fees

4 Oct - 5 Oct

An indoor swimming pool with slides, seating areas, and a covered section with umbrellas.

A hotel room with a kitchen area, a bed, a TV, and a seating area.

A hotel room with two beds, a desk with a chair, a TV, and a window with curtains.

A modern kitchen with black cabinets, white countertops, and a tiled backsplash. There are pendant lights, a refrigerator, and a coffee machine.

6. Best Western Rochester Hotel Mayo Clinic Area/St. Mary's

Rochester

Margita

AU$150

includes taxes & fees

18 Sept - 19 Sept

A swimming pool with clear blue water, surrounded by lounge chairs and a view of residential buildings through large windows.

A modern reception area with a brick-patterned wall, two reception desks, a flat-screen TV, and seating arrangements including a sofa and chairs.

A modern lounge area with seating, a fireplace, and a bar area.

A modern hotel with a flat roof, multiple windows, and a covered outdoor seating area.

7. Residence Inn by Marriott Rochester Mayo Clinic Area South

Rochester

Heather

AU$211

includes taxes & fees

26 Sept - 27 Sept

A modern hotel lobby with a reception desk, seating area, and a dining space.

A Holiday Inn Express building with a stone facade and illuminated signage.

A modern breakfast area with a counter displaying various food items, a water dispenser, and a sign indicating a bakery section.

A modern hotel room with a wooden desk, orange chair, dark sofa, and a small table.

8. Holiday Inn Express Rochester South - Mayo Area by IHG

Rochester

Dezel

AU$157

includes taxes & fees

4 Oct - 5 Oct

An indoor swimming pool with a curved design, surrounded by palm trees and a white pool ladder.

A modern interior with a fireplace, a green armchair, and a patterned rug.

A modern hotel with a prominent neon sign, multiple floors, and a well-maintained lawn area.

A modern hotel lobby with a reception desk, a digital information kiosk, and a patterned floor.

9. Treasure Island Resort & Casino

Welch

James

AU$135

includes taxes & fees

7 Oct - 8 Oct

A coffee shop interior with a wooden counter, menu boards, and seating area.

A hotel exterior with a 'Townplace Suites' sign, outdoor seating area, and 'OPEN' signage.

A hotel room with a bed, bedside table, and a window with curtains.

An outdoor seating area with tables and chairs, a neon sign, and flower arrangements.

10. TownePlace Suites by Marriott Rochester Mayo Clinic Area

Kutzky Park

Amanda

AU$219

includes taxes & fees

18 Sept - 19 Sept

A modern hotel lobby with a reception desk, seating area, and a kitchenette.

A modern hotel lobby with a reception desk, seating area, and a large window providing natural light.

A small, well-organized pantry with shelves stocked with snacks and beverages.

A hotel room with a large bed, a desk, a chair, and a kitchenette.

11. Spark by Hilton Rochester South

Rochester

Helena

AU$143

includes taxes & fees

13 Sept - 14 Sept

A spacious hotel lobby with multiple seating areas, including sofas and round tables, and a large dining area with yellow chairs.

A grocery store with refrigerated and frozen sections, shelves stocked with snacks, and a variety of beverages.

A spacious lobby with a large seating area, a fireplace, and large windows providing natural light.

A reception area with two counters, a patterned wall, and a wooden floor.

12. Hilton Garden Inn Rochester Downtown, MN

Downtown Rochester

BRIAN

AU$182

includes taxes & fees

12 Sept - 13 Sept

An outdoor seating area with wooden pillars, colorful striped cushions, and potted plants.

A modern restaurant with a counter, seating area, and a TV screen.

A modern lounge area with a sofa, chairs, and tables.

An indoor swimming pool with wooden ceiling beams, yellow chairs, and tables along the sides.

13. Home2 Suites by Hilton Rochester Mayo Clinic Area

Rochester

Vickie

AU$195

includes taxes & fees

12 Sept - 13 Sept

A modern living room with a flat-screen TV, a fireplace, comfortable seating, and a large window with a city view.

A modern indoor swimming pool with seating areas and a city view.

A spacious lobby with modern furniture, a spiral staircase, and large windows offering views of the outdoors.

A modern hotel entrance with a glass facade, illuminated signage, and a covered walkway.

14. Hilton Rochester Mayo Clinic Area

Downtown Rochester

Jennifer

AU$287

includes taxes & fees

12 Sept - 13 Sept

A modern indoor patio with a fire feature, seating, and large windows.

A modern living room with a fireplace, large windows, and a flat-screen TV mounted on the wall.

A modern hotel lobby with a large glass wall, a green wall mural, and a seating area with sofas and chairs.

A modern interior with a seating area, a bookshelf, and a window with a view of trees.

15. EVEN Hotel Rochester - Mayo Clinic Area by IHG

Kutzky Park

paul

AU$187

includes taxes & fees

18 Sept - 19 Sept

A hotel reception desk with a wooden counter, a computer, and a vase with flowers.

A hotel room with a large bed, a view through a sliding glass door to an outdoor area, a nightstand with a lamp, and a wooden headboard.

A living room with stone walls, a fireplace, leather furniture, and a ceiling fan.

A hotel room with a large bed, a separate bathroom with a bathtub, and a skylight ceiling.

16. Baymont by Wyndham Kasson Rochester Area

Kasson

Bryce

AU$90

includes taxes & fees

27 Sept - 28 Sept

A modern outdoor seating area with a built-in fireplace, two wooden chairs, a table, and a sofa.

A hotel room with a kitchenette, a bed, a sofa, a small table, and a window with curtains.

A modern interior with a dining area, a kitchen, and a pantry stocked with snacks.

A modern kitchen with a central island, bar stools, and pendant lighting. A living area with a sofa, ottoman, and a view of the outdoors is visible.

17. Staybridge Suites Rochester - Mayo Clinic Area by IHG

Kutzky Park

matthew

AU$180

includes taxes & fees

12 Sept - 13 Sept

A Holiday Inn Express building with a covered entrance, outdoor seating area, and a well-lit facade.

A hotel dining area with multiple tables and chairs, a coffee station, and a seating area with sofas.

A hotel room with two beds, a desk, a chair, a television, and a kitchenette.

A coffee station with two espresso machines and a variety of coffee pods and cups.

18. Holiday Inn Express & Suites Rochester – Mayo Clinic Area by IHG

Kutzky Park

Janet

AU$176

includes taxes & fees

11 Sept - 12 Sept

A reception area with a wooden reception desk, a "Welcome to the Bread & Butter State" sign, and a "Please Center" sign.

A coffee station with four coffee dispensers, a stack of disposable cups, and a tray with various coffee-related items.

A modern lounge area with seating arrangements, a reception desk, and a patterned wall.

A hotel room with a bed, a desk, a chair, a TV, and a bathroom visible through an open door.

19. Hampton Inn Rochester-South

Rochester

Lynne

AU$151

includes taxes & fees

1 Oct - 2 Oct

An indoor swimming pool with a dolphin sculpture, wooden ceiling, and clear windows.

A hotel room with a flat-screen TV, a sofa with a red pillow, a small table, and a lamp.

A hotel reception area with a red 'Hello' sign, a reception desk, a coffee station, and a fireplace.

A hotel reception area with a coffee station, seating area, and a fireplace.

20. TownePlace Suites by Marriott Rochester

Rochester

Terry

AU$157

includes taxes & fees

2 Oct - 3 Oct

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Holiday Rentals in Southeast Minnesota

Aparthotel

A spacious living area with a modern staircase, leather sofas, and contemporary lighting.

A rooftop pool area with lounge chairs and umbrellas, surrounded by a modern building with a brick facade.

An outdoor seating area with blue sofas and wicker chairs, a wooden table, and green ottomans on a tiled patio.

A modern pool table in a spacious, well-lit room with large windows and a bar area.

The Berkman

Folwell

"This was a very nice hotel located in downtown. It’s directly across from Mayo. The concierge checked each guest in and very helpful. This nice touch made the experience extra special."

Apartment

A bedroom with a large bed, a TV on a dresser, and a view of the city through large windows.

A multi-story building with the sign 'Broadway Plaza' indicating a commercial or hotel property.

An indoor swimming pool with a clock on the wall, lounge chairs, and a lifeguard warning sign.

Broadway Plaza, Trademark Collection by Wyndham

Downtown Rochester

"We have stayed at Broadway Plaza multiple times. It is our go-to property. It is quiet, clean and provides easy access to the Mayo Clinic and downtown restaurants and services. The staff is always courteous and efficient offering any services or items we may need. Our stays here have always been enjoyable."

Apartment

A two-story building with a green exterior, a covered porch, and a driveway leading to a garage.

A room with a large window, a flat-screen TV mounted on the wall, a fluffy chair, a small round table, and a chair with a basket.

A cozy room with a sofa bed, a small side table, and a window with blinds.

A bed with a white blanket and patterned pillows, a framed picture on the wall, and a window with a view.

< 1/2 Mi to Downtown: Quiet Northfield Apartment

Northfield

"It was amazing!"

Apartment

A modern kitchen with a central island, bar stools, and a large window.

A spacious living room with a large sofa set, a wooden coffee table, and a large window.

A spacious living area with a large sofa, a coffee table, and a dining table with chairs. There is a ceiling fan and a floor lamp.

A marina with boats docked, a parking area, and a view of the surrounding landscape.

1 Block to Lake City Marina: Condo w/ Rooftop Deck

Lake City

"Loved the location and condo itself"

Cottage

A modern interior with a stone fireplace, wooden walls, a leather sofa, and a dining area.

A bedroom with a wooden bed, a desk, a lamp, and large windows with a view of trees.

A log cabin interior with a wooden ceiling, a red sofa, a brown leather couch, and a person seated on a chair.

A kitchen with wooden cabinets, a stove, a sink, and a window with a view of trees.

Pet-friendly Cabin Retreat: Walk to Lake Pepin!

Pepin

"What a fun place! Plenty of room. We played foosball had a fire outside. We enjoyed the fireplace too. We hadn’t anticipated no TV though. You might want to add that to your description. The water is definitely smelly, so we truly appreciated the 40 bottles of water you provided. Definitely a great place for a girl’s weekend or family reunion!"

Apartment

A bedroom with a bed, a chair, a table, a fireplace, and a ceiling fan.

A living room with a fireplace, a television mounted above it, and a large window offering a view of the outdoors.

A kitchen with wooden cabinets, stainless steel appliances, and a dining table with chairs.

A single-story house with a front porch, a small staircase leading to a deck, and a stone retaining wall.

Pet-friendly Wabasha Studio: Boat, Ski & Explore!

Wabasha

"Great property! Very convenient location as well."

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Stay near popular Southeast Minnesota attractions

A cave with a reflective pool and illuminated walls.

Forestville Mystery Cave State Park

9.0/10 (22 reviews)

Commune with nature and explore the great outdoors at Forestville Mystery Cave State Park during your travels in Preston. Wander the parks or discover the area's countryside.

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A waterfall cascading over a rocky cliff.

Niagara Cave

9.2/10 (23 reviews)

Commune with nature and explore the great outdoors at Niagara Cave during your travels in Harmony. Amble within the natural setting or visit the churches in this family-friendly area.

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A courtyard with a stone fountain, yellow buildings with arches, and a clear sky.

Villa Bellezza

8.4/10 (31 reviews)

You can enjoy a tasting or tour at Villa Bellezza during your travels to Pepin. While you're in the area, stroll along the lakeside.

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Mayo Civic Center

9.2/10 (818 reviews)

Catch an event at Mayo Civic Center during your trip to Rochester. Attend a sporting event or simply visit the area's shops.

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Apache Mall

8.6/10 (1,101 reviews)

During your visit to Rochester, you can find the perfect gifts to bring home at Apache Mall. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.

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Rochester Recreation Center

8.0/10 (205 reviews)

Catch an event at Rochester Recreation Center during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.

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Olmsted County Fairgrounds

7.8/10 (177 reviews)

Take the family on an outing to Olmsted County Fairgrounds during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.

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Shattuck-St. Mary's School

9.6/10 (69 reviews)

Explore the campus of Shattuck-St. Mary's School during your trip to Faribault. Visit the shops in this family-friendly area or simply enjoy its cafes.

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Learn more about Southeast Minnesota

Discover the family-friendly area of Southeast Minnesota—sports teams, a scenic riverfront and sights from Mayowood Mansion to Apache Mall.

See all hotels in Southeast Minnesota

A lake surrounded by dense forest and a distant hill with a fort.

Top Southeast Minnesota Hotel Reviews

Recent Reviews in Southeast Minnesota

Aspen Select

10/10 Excellent

"The room had everything we needed.Restaurant right next Door.We would return."

Treasure Island Resort & Casino

10/10 Excellent

"This property was much more that I expected! Loved the water park, swim up bar, bowling alley, kids arcade, and of course the gaming floor. Was much larger than I thought it would be. The food and drinks were wonderful also!"

Kahler Inn and Suites - Mayo Clinic Area

8/10 Good

"The room was clean and the front desk were very helpful in getting around."

Med City Inn & Suites - Mayo Clinic Area

8/10 Good

"Everything"

Kahler Grand Hotel

10/10 Excellent

"Pool use to be a warm pool. It's cold now. Fan in bath stopped working and fan on AC was very noisy. Water Fluxuated in temps for shower."

Hyatt House Rochester/Mayo Clinic Area

8/10 Good

"Great location, 5 minute walk to Mayo. Great pillows, cold AC! Both very important to us. 4th floor patio is awesome. Staff is very friendly and helpful! Breakfast was also very good. Forgot to mention, with all of the construction around Mayo, this place was super easy to get in and out of."

Hotel Indigo Rochester – Mayo Clinic Area by IHG

10/10 Excellent

"Best happy hour ever! Great prices, nice selection of food, and generous portions. Chef is very good, Darian does a fabulous job at the bar. Breakfast is also a good value and tasty food."

More cheap accommodation in Southeast Minnesota

Birch Hill Suite Rochester – Med City

3595 Commercial Drive SW Rochester MN

AU$93

4 Oct - 5 Oct

includes taxes & fees

Super 8 by Wyndham Winona MN

1025 Sugar Loaf Rd Winona MN

AU$98

13 Sept - 14 Sept

includes taxes & fees

Med City Inn & Suites - Mayo Clinic Area

435 16th Ave Nw Rochester MN

AU$101

7 Sept - 8 Sept

includes taxes & fees

8/10 Very good! (1,016 reviews)

Boarders Inn & Suites by Cobblestone Hotels - Faribault

1801 Lavender Dr Faribault MN

AU$114

9 Sept - 10 Sept

includes taxes & fees

Cobblestone Hotel & Suites - Austin

1000 16th Avenue NW Austin MN

AU$128

7 Oct - 8 Oct

includes taxes & fees

8.8/10 Excellent! (794 reviews)

Best Western Rochester Hotel Mayo Clinic Area/St. Mary's

1517 16th St Sw Rochester MN

AU$150

18 Sept - 19 Sept

includes taxes & fees

Explore a world of travel with Expedia

Book Hotels in Southeast Minnesota on Expedia.com

Search Southeast Minnesota hotels

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Southeast Minnesota

Check prices for these dates

Filter by

Property class

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Our top choices for Southeast Minnesota hotels

1. Hampton Inn & Suites Rochester-North

2. Hyatt House Rochester/Mayo Clinic Area

3. Fairfield Inn & Suites Rochester Mayo Clinic Area/St. Marys

4. Hotel Indigo Rochester – Mayo Clinic Area by IHG

5. Comfort Inn & Suites Rochester South Mayo Clinic

6. Best Western Rochester Hotel Mayo Clinic Area/St. Mary's

7. Residence Inn by Marriott Rochester Mayo Clinic Area South

8. Holiday Inn Express Rochester South - Mayo Area by IHG

9. Treasure Island Resort & Casino

10. TownePlace Suites by Marriott Rochester Mayo Clinic Area

11. Spark by Hilton Rochester South

12. Hilton Garden Inn Rochester Downtown, MN

13. Home2 Suites by Hilton Rochester Mayo Clinic Area

14. Hilton Rochester Mayo Clinic Area

15. EVEN Hotel Rochester - Mayo Clinic Area by IHG

16. Baymont by Wyndham Kasson Rochester Area

17. Staybridge Suites Rochester - Mayo Clinic Area by IHG

18. Holiday Inn Express & Suites Rochester – Mayo Clinic Area by IHG

19. Hampton Inn Rochester-South

20. TownePlace Suites by Marriott Rochester

Holiday Rentals in Southeast Minnesota

The Berkman

Broadway Plaza, Trademark Collection by Wyndham

< 1/2 Mi to Downtown: Quiet Northfield Apartment

1 Block to Lake City Marina: Condo w/ Rooftop Deck

Pet-friendly Cabin Retreat: Walk to Lake Pepin!

Pet-friendly Wabasha Studio: Boat, Ski & Explore!

Stay near popular Southeast Minnesota attractions

Forestville Mystery Cave State Park

Niagara Cave

Villa Bellezza

Mayo Civic Center

Apache Mall

Rochester Recreation Center

Olmsted County Fairgrounds

Shattuck-St. Mary's School

Learn more about Southeast Minnesota

Top Southeast Minnesota Hotel Reviews

Recent Reviews in Southeast Minnesota

Aspen Select

Treasure Island Resort & Casino

Kahler Inn and Suites - Mayo Clinic Area

Med City Inn & Suites - Mayo Clinic Area

Kahler Grand Hotel

Hyatt House Rochester/Mayo Clinic Area

Hotel Indigo Rochester – Mayo Clinic Area by IHG

More cheap accommodation in Southeast Minnesota

Birch Hill Suite Rochester – Med City

Super 8 by Wyndham Winona MN

Med City Inn & Suites - Mayo Clinic Area

Boarders Inn & Suites by Cobblestone Hotels - Faribault

Cobblestone Hotel & Suites - Austin

Best Western Rochester Hotel Mayo Clinic Area/St. Mary's

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