Boutique Hotels & Resorts in San Juan Islands
Change your mindBook hotels with free cancellation
Be pickySearch almost a million properties worldwide
Check availability on San Juan Islands Boutique Hotels
Tonight
24 Aug - 25 AugTomorrow
25 Aug - 26 AugThis weekend
28 Aug - 30 AugNext weekend
4 Sept - 6 SeptNo exact matches found, but these alternatives could be just right
Recommended hotels in San Juan Islands
AU$182
includes taxes & fees
31 Aug - 1 Sept
AU$401
includes taxes & fees
7 Sept - 8 Sept
AU$334
includes taxes & fees
20 Sept - 21 Sept
AU$366
includes taxes & fees
22 Sept - 23 Sept
AU$301
includes taxes & fees
26 Aug - 27 Aug
AU$368
includes taxes & fees
25 Aug - 26 Aug
AU$354
includes taxes & fees
26 Aug - 27 Aug
AU$707
includes taxes & fees
20 Sept - 21 Sept
View all properties
Top San Juan Islands Hotel Reviews
Bird Rock Hotel
10/10 Excellent
"Very cute old hotel 2 blocks from ferry. No AC in our room but we didn’t need it with open windows and ceiling fan! Having no staff there wasn’t a problem and they have dishes and a microwave in the lobby for making oatmeal or heating up leftovers. They set out lemonade and cookies in the afternoon. The only thing that I would suggest thats missing to have in the lobby would be a water cooler/filter refillable station. PARKING: We parked for the day up about 2 blocks in the 10 hr lot, then around 4 or 5, we’d bring it back down to street parking in the evening and in the am, take the car back to the free 10 hr lot not far away."
The Edenwild Boutique Inn
8/10 Good
"Lovely place to stay and great location. Large, bright room and friendly owner. Note, 'tho, that there is no AC. It got pretty warm in our upstairs room."
Explore a world of travel with Expedia
- Farmstay in Bellingham
- Lavissh Inn & Suites
- Wingate by Wyndham Bellingham Heritage Inn
- Bellingham Hotels
- Jacobs Landing 1106 View 2 Bedroom Condo
- Blaine Hotels
- Burlington Hotels
- Cabin Rentals in Camano Island
- Sea Glass Hideaway
- Cabin Rentals in Dungeness
- Orcas Island
- Hotels near Ebey's Landing National Historical Reserve
- Best Western Plus Arlington/Marysville
- Romantic LOG CABIN on Stilly River w/ Hot tub! Setup for 2 people only
- Everett Hotels
- Quiet Glamping Barn on a Working Farm with Fire Pit and Open Views
- Apartments in Ferndale
- Ferndale Cottage on Private 20 Acre Farm!
- Ferndale Hotels
- Resort in Ferndale
- Beach house
- Lgbt Welcoming Hotels in Friday Harbor
- Cabin Rentals in Greenbank
- Pet Friendly Hotels in Greenbank
- Hansville Hotels
- Joyce Hotels
- Harbor View Haven by Avantstay Private Backyard
- Apartments in Lynden
- Lynden Hotels
- Maple Falls Hotels
- Cabin Rentals in Marysville
- Farmstay in Marysville
- Cheap Hotels in Marysville
- Pet Friendly Hotels in Marysville
- Marysville Hotels
- Farmstay in Mount Vernon
- Swinomish Casino & Lodge
- Mount Vernon Hotels
- Oak Harbor Hotels
- Foothills hideaway 3 bedrooms 2 baths 2300 sf
- New Secluded Hillside Retreat on 10 acres with Stunning Views
- Ocean View Tent Site T4
- Perch small · Treehouse
- Reflection Haven
- Olympic Glamping
- Port Gamble Hotels
- Arcadian Grove Studio Loft in the Woods
- Wyndham Hotels in Whidbey Island
- Flights to Bellingham
- Flights to Bow
- Flights to Lynden
- Flights to Mount Vernon
- Flights to San Juan Islands
- Flights to Whidbey Island
- Flights from Bellingham Intl.
- Flights from William R. Fairchild Intl.
- Flights from Orcas Island
- Flights from Freeland
- Flights from Sequim
- Flights from Napa (APC) to Bellingham (BLI)
- Flights from Brisbane (BNE) to Bellingham (BLI)
- Flights from Melbourne (MEL) to Bellingham (BLI)
- Flights from Oakland (OAK) to Bellingham (BLI)
- Flights from Seattle (SEA) to Bellingham (BLI)
- Flights from Sydney (SYD) to Bellingham (BLI)
- Flights from Sydney (SYD) to Port Angeles (CLM)
- Flights from Edmonton (YEG) to Blaine (BWS)
- Flights from Vancouver (YVR) to Bellingham (BLI)