Marathon Shores Hotels, Marathon

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Check prices for these dates

Tonight
9 Nov - 10 Nov
Tomorrow
10 Nov - 11 Nov
This weekend
13 Nov - 15 Nov
Next weekend
20 Nov - 22 Nov

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Our top choices for Marathon Shores hotels

A balcony with a view of the ocean, a round table, and two chairs.

1. Fairfield Inn & Suites by Marriott Marathon Florida Keys

Fairfield Inn & Suites by Marriott Marathon Florida Keys
3.0 star property
1.9 km from Marathon Shores
9.2 out of 10, Wonderful, (1,236 reviews)
"Great location, walked to tiki bar and restaurants."
United States
Katelyn
The price is AU$264
includes taxes & fees
15 Nov - 16 Nov
Fairfield Inn & Suites by Marriott Marathon Florida Keys
A pool area with lounge chairs, a thatched-roof structure, and a view of the ocean.

2. Hampton Inn Marathon - Florida Keys

Hampton Inn Marathon - Florida Keys
2.5 star property
2.1 km from Marathon Shores
9.0 out of 10, Wonderful, (1,006 reviews)
"Great place to stay will definitely stay again"
United States
Linda
The price is AU$269
includes taxes & fees
30 Nov - 1 Dec
Hampton Inn Marathon - Florida Keys
A covered outdoor seating area with tables and chairs, overlooking a body of water and a distant shoreline.

3. Bonefish Bay Motel

Bonefish Bay Motel
2.5 star property
1.6 km from Marathon Shores
9.2 out of 10, Wonderful, (668 reviews)
"The staff were phenomenal especially the office staff. Very clean room Superb bathroom Free use if the kayaks Pool was nice."
United States
Mark
The price is AU$190
includes taxes & fees
1 Dec - 2 Dec
Bonefish Bay Motel
A marina with a dock, a boat, and a row of buildings with large windows.

4. Coconut Cay Resort & Marina

Coconut Cay Resort & Marina
3.0 star property
2.8 km from Marathon Shores
8.6 out of 10, Excellent, (1,082 reviews)
"It was our first time to the Keys, and it served as a great spot to venture out from. Very comfortable rooms. The only issue we had was that the pool was being renovated, so check on that, if a pool is your deciding factor."
United States
Robert
The price is AU$118
includes taxes & fees
10 Dec - 11 Dec
Coconut Cay Resort & Marina
A covered outdoor area with a view of a pool and palm trees.

5. Kingsail Resort

Kingsail Resort
2.0 star property
2.9 km from Marathon Shores
8.6 out of 10, Excellent, (1,136 reviews)
"The customer service was great, we had no issues and enjoyed the room."
United States
Nate
The price is AU$156
includes taxes & fees
3 Dec - 4 Dec
Kingsail Resort
A hammock on a sandy beach with palm trees, a pool, and lounge chairs in the background.

6. Seascape Resort & Marina

Seascape Resort & Marina
3.0 star property
2.5 km from Marathon Shores
9.4 out of 10, Exceptional, (648 reviews)
"We loved the beach, pool and docks. The atmosphere was amazing!"
United States
Jane
The price is AU$279
includes taxes & fees
8 Dec - 9 Dec
Seascape Resort & Marina
A beach view through a window with white curtains, a wooden deck, and beach chairs.

7. Glunz Ocean Beach Hotel & Resort

Glunz Ocean Beach Hotel & Resort
3.0 star property
2.5 km from Marathon Shores
9.0 out of 10, Wonderful, (1,001 reviews)
"The best place in the keys area, 100% recommend."
United States
Mary
The price is AU$366
includes taxes & fees
10 Nov - 11 Nov
Glunz Ocean Beach Hotel & Resort
A marina with boats docked, a swimming pool, and a building with a blue roof.

8. Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

Faro Blanco Resort Marathon Florida Keys, Curio by Hilton
4.0 star property
7.1 km from Marathon Shores
8.6 out of 10, Excellent, (1,135 reviews)
"Great resort, restaurant and bar!"
United States
Rick
The price is AU$282
includes taxes & fees
15 Nov - 16 Nov
Faro Blanco Resort Marathon Florida Keys, Curio by Hilton
A building with a white exterior, purple doors, and a small patio area with chairs and a table.

9. Siesta Motel

Siesta Motel
2.0 star property
2.6 km from Marathon Shores
7.4 out of 10, Good, (793 reviews)
"Clean, very affordable and a great location."
United States
Troy
The price is AU$127
includes taxes & fees
23 Nov - 24 Nov
Siesta Motel
An outdoor seating area with wicker furniture and cushions, a thatched-roof structure, and lush greenery.

10. Tropical Cottages

Tropical Cottages
3.0 star property
3.6 km from Marathon Shores
8.6 out of 10, Excellent, (1,014 reviews)
"The family running the food truck and tiki hut were great. Felt like we were guests in their home."
United States
Douglas
The price is AU$162
includes taxes & fees
10 Nov - 11 Nov
Tropical Cottages
A clear blue pool with white lounge chairs and palm trees, overlooking a calm sea.

11. Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys
3.0 star property
7 km from Marathon Shores
9.0 out of 10, Wonderful, (1,009 reviews)
"Absolutely perfect place to stay."
United States
Keith
The price is AU$338
includes taxes & fees
2 Dec - 3 Dec
Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys
A spacious living area with a gray sectional sofa, wooden beams, and a ceiling fan.

12. Aqua Lodge Rentals At Coconut Cay

Aqua Lodge Rentals At Coconut Cay
3.5 star property
2.7 km from Marathon Shores
9.6 out of 10, Exceptional, (239 reviews)
"Never stayed in a houseboat before. It was a novel experience!"
United States
Susan
The price is AU$379
includes taxes & fees
15 Nov - 16 Nov
Aqua Lodge Rentals At Coconut Cay
A clear view of a swimming pool with lounge chairs and umbrellas, surrounded by palm trees and a clear sky.

13. Banana Bay Resort & Marina

Banana Bay Resort & Marina
3.0 star property
5 km from Marathon Shores
7.4 out of 10, Good, (1,001 reviews)
"Staff was friendly and room was awesome."
United States
Alex
The price is AU$279
includes taxes & fees
12 Nov - 13 Nov
Banana Bay Resort & Marina
A small boat house named "SEACOVE" with a dock extending into calm water, surrounded by pebbles and rocks.

14. Floating Sea Cove Resort & Marina

Floating Sea Cove Resort & Marina
2.0 star property
2.4 km from Marathon Shores
5.4 out of 10, (999 reviews)
"Staff was very helpful The view of the water was nice."
United States
Luanne
The price is AU$111
includes taxes & fees
15 Nov - 16 Nov
Floating Sea Cove Resort & Marina
A wooden deck with two chairs and a table, overlooking a beach with palm trees and the ocean.

15. Rainbow Bend Resort

Rainbow Bend Resort
2.5 star property
8.5 km from Marathon Shores
8.2 out of 10, Very good, (1,002 reviews)
"Great place. Friendly staff."
United States
mark
The price is AU$235
includes taxes & fees
10 Nov - 11 Nov
Rainbow Bend Resort
A modern kitchen with white cabinets, a microwave, and a dining area with a table and chairs.

16. Yacht Haven Marina

Yacht Haven Marina
3.5 star property
4.3 km from Marathon Shores
9.6 out of 10, Exceptional, (383 reviews)
"Loved staying in the aqua lodges, such a relaxing place."
United States
Lauren
The price is AU$393
includes taxes & fees
10 Dec - 11 Dec
Yacht Haven Marina
A nighttime pool area with a clear view of the pool, surrounding palm trees, and a building with a sign.

17. Skipjack Resort & Marina

Skipjack Resort & Marina
3.0 star property
4.8 km from Marathon Shores
8.6 out of 10, Excellent, (1,298 reviews)
"Great spot"
Canada
Justin
The price is AU$320
includes taxes & fees
10 Nov - 11 Nov
Skipjack Resort & Marina
A swimming pool surrounded by palm trees and lounge chairs.

18. Tranquility Bay Beachfront Hotel and Resort

Tranquility Bay Beachfront Hotel and Resort
4.0 star property
6.6 km from Marathon Shores
8.8 out of 10, Excellent, (1,002 reviews)
"I enjoyed the hotel ."
United States
Madileny
The price is AU$433
includes taxes & fees
1 Dec - 2 Dec
Tranquility Bay Beachfront Hotel and Resort
A room with a wooden table and chairs, a sliding glass door leading to a balcony, and a blue cooler on the floor.

19. Captain Pips Marina & Hideaway

Captain Pips Marina & Hideaway
3.0 star property
7.5 km from Marathon Shores
9.0 out of 10, Wonderful, (1,005 reviews)
"Good location, nice view, easy to park your own boats or rental boats."
United States
Yi
The price is AU$233
includes taxes & fees
9 Dec - 10 Dec
Captain Pips Marina & Hideaway
A tropical resort with a swimming pool, palm trees, and a view of the ocean.

20. Gulf View Waterfront Resort

Gulf View Waterfront Resort
2.5 star property
9.9 km from Marathon Shores
8.4 out of 10, Very good, (644 reviews)
"The stay was amazing. The staff was extremely friendly and helpful"
United States
Ed
The price is AU$145
includes taxes & fees
12 Nov - 13 Nov
Gulf View Waterfront Resort
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Compare popular hotels in Marathon Shores

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
A balcony with a view of the ocean, a round table, and two chairs.
Fairfield Inn & Suites by Marriott Marathon Florida Keys
3.0 star property
9.2
Wonderful
1,236 reviews
View
A covered outdoor seating area with tables and chairs, overlooking a body of water and a distant shoreline.
Bonefish Bay Motel
2.5 star property
9.2
Wonderful
668 reviews
View
A marina with a dock, a boat, and a row of buildings with large windows.
Coconut Cay Resort & Marina
3.0 star property
8.6
Excellent
1,082 reviews
View
A pool area with lounge chairs, a thatched-roof structure, and a view of the ocean.
Hampton Inn Marathon - Florida Keys
2.5 star property
9.0
Wonderful
1,006 reviews
View
A hammock on a sandy beach with palm trees, a pool, and lounge chairs in the background.
Seascape Resort & Marina
3.0 star property
9.4
Exceptional
648 reviews
View

Our guide on where to stay in Marathon Shores

Find the best Marathon Shores areas for the activities you enjoy most.
An aerial view of a coastal area with a large bay, several islands, and a densely populated shoreline.

Little Venice

While there might not be top attractions in Little Venice, you can explore the larger area and discover places like Captain Hooks Marina and Dive Center and Sunset Park Beach.

A sailboat with white sails on a turquoise sea, a beach with palm trees, and a partly cloudy sky.

Coral Lagoon

Coral Lagoon might not have many top sights, but Captain Hooks Marina and Dive Center and Sunset Park Beach are two attractions nearby that you can check out.

An aerial view of a coastal town with a beach, clear turquoise waters, and a small island.

Farara Shores

Farara Shores might not have many top sights, but Captain Hooks Marina and Dive Center and Sunset Park Beach are two attractions nearby that you can check out.

Top Marathon Shores Hotel Reviews

A covered outdoor seating area with tables and chairs, overlooking a body of water and a distant shoreline.
Bonefish Bay Motel

Bonefish Bay Motel

Bonefish Bay Motel
Marathon

10/10 Excellent

Friendly staff easy check in, clean room with excellent amenities
Australia
Janine
Reviewed December 7, 2025
Bonefish Bay Motel

Frequently Asked Questions

What is Marathon Shores like?

Travellers to Marathon's Marathon Shores neighbourhood will be sure to enjoy a stay here. Make sure that you visit Captain Hooks Marina and Dive Center and Marathon Air Museum as part of your Marathon Shores travel plans.

What's a favourite hotel to stay in Marathon Shores?

For your stay in Marathon Shores, Oceanside waterfront 2/2 home with 55ft dock and paddle equipment is one of the top choices based on our traveller data.

How many hotels will I find in Marathon Shores?

If you're searching for places to stay in Marathon, Expedia has something to meet your needs with 195 Marathon Shores hotels and other accommodation options to choose from.

If I need to cancel my hotel reservation in Marathon Shores, will I receive a refund?

Yes! The majority of hotel room reservations are fully refundable if cancelled before the hotel’s cancellation deadline, which is often 24 or 48 hours before your arrival date. If your reservation is non-refundable, it might still be possible to cancel it and get a refund within 24 hours of booking. Put your dates in and click on "Search", then filter by "fully refundable" to view top deals in Marathon Shores.

What can I see and do in this Marathon neighbourhood?

A few attractions you might want to check out while you're in Marathon Shores are Captain Hooks Marina and Dive Center and Marathon Air Museum. Sunset Park Beach and Coco Plum Beach are also worth a visit when you're out sightseeing in Marathon.