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Our top choices for Santo Tomás hotels

HOSPEDAJE DELFIN AZUL

HOSPEDAJE DELFIN AZUL
3.0 star property
Puerto Villamil
7.0 out of 10, Good, (2)
"Owner was nice and kind. "
Canada
Florence
The price is AU$74
29 Dec - 30 Dec
HOSPEDAJE DELFIN AZUL

Yellow Heron house

Yellow Heron house
3.0 star property
Puerto Villamil
10.0 out of 10, Exceptional, (1)
The price is AU$849
6 Jan - 7 Jan 2026
Yellow Heron house

Cormorant Beach House

Cormorant Beach House
3.5 star property
Puerto Villamil
9.6 out of 10, Exceptional, (82)
"Best Hotel On Isabela - Beach View Rooms A Must - Staff So Helpful - Amaze Cafe On Top With Complimentary Breakfast 7-9am - Beach Has Best Swimming With Powder White Sand And No Rocks or Reefs In The Water - V Quiet Island Never Saw More Than Ten People On The WHOLE Beach At A Time "
Canada
jason
The price is AU$223
6 Jan - 7 Jan 2026
Cormorant Beach House

Cartago Bay

Cartago Bay
2.5 star property
Puerto Villamil
8.0 out of 10, Very good, (6)
"Very poor internet. Otherwise a nice clean place with nice people. She got up early to get us something to eat for a 5AM departure "
United States
DAVID
Cartago Bay

Flip Flop House

Flip Flop House
3.5 star property
Puerto Villamil
10.0 out of 10, Exceptional, (3)
"Great space to unwind after a day of adventures "
United States
Jaelle
The price is AU$355
5 Jan - 6 Jan 2026
Flip Flop House

Hotel La Laguna Galapagos

Hotel La Laguna Galapagos
3.0 star property
Puerto Villamil
9.0 out of 10, Wonderful, (100)
"The view is amazing, and the staff is always helpful. I have no complaintsñ it's the best place to stay in Isabela."
Mexico
Saul
Hotel La Laguna Galapagos

HOTEL SIERRA NEGRA

HOTEL SIERRA NEGRA
3.0 star property
Puerto Villamil
8.6 out of 10, Excellent, (38)
"Excellent beach front hotel with close proximity to the town center. Staff is very friendly and helpful, room was clean with hot water and clean sheets and towels. Would come back to Theo property if back to Isabela "
United States
Elena
The price is AU$94
29 Dec - 30 Dec
HOTEL SIERRA NEGRA

Hostal Las Gardenias

Hostal Las Gardenias
3.0 star property
Puerto Villamil
9.0 out of 10, Wonderful, (9)
"Friendly staff"
United States
Joel
The price is AU$110
29 Dec - 30 Dec
Hostal Las Gardenias

Mi Playa Galapagos Beachfront

Mi Playa Galapagos Beachfront
3.0 star property
Puerto Villamil
9.0 out of 10, Wonderful, (6)
"The location is unparalleled! Right on the beach with lots of places to eat within walking distance! Highly recommend!!"
United States
Shaena
Mi Playa Galapagos Beachfront

Iguana Crossing Boutique Hotel

Iguana Crossing Boutique Hotel
3.0 star property
Puerto Villamil
8.8 out of 10, Excellent, (83)
"Very quiet hotel."
Canada
Giovani
The price is AU$470
10 Jan - 11 Jan 2026
Iguana Crossing Boutique Hotel

Gran Hostal Tintorera

Gran Hostal Tintorera
3.0 star property
Puerto Villamil
9.0 out of 10, Wonderful, (113)
"I have so many great things to say about my stay! Our room was very clean and we received cleaning service whenever we wanted, we loved our cold AC and hot showers ! We enjoyed our breakfast buffet in the mornings and Dani and her family made us feel at home. We can’t wait to visit them again ! "
United States
Valerie
Gran Hostal Tintorera

Hotel Isamar Galapagos Beachfront

Hotel Isamar Galapagos Beachfront
3.5 star property
Puerto Villamil
9.0 out of 10, Wonderful, (60)
"Relaxing room facing a deck with immediate access to the beach. Beach is clean and nice view. Helpful staff and free coffee always available."
United States
Suming
Hotel Isamar Galapagos Beachfront

Hotel Cally Galapagos

Hotel Cally Galapagos
3.0 star property
Puerto Villamil
8.6 out of 10, Excellent, (27)
"Very nice hotel, excellent location… Gabriel and his family managing the hotel were always ready to help… 24 hour free coffee and water stations were very helpful… breakfast was amazing with fresh fruits and different juices each day. Highly recommend the hotel…"
United States
Jayen
The price is AU$208
5 Jan - 6 Jan 2026
Hotel Cally Galapagos

Hostal Galapagos by Bar de Beto

Hostal Galapagos by Bar de Beto
2.0 star property
Puerto Villamil
8.0 out of 10, Very good, (40)
"My stay was great and the Hotel is nicely located close to the beach. "
United States
Jefferson
The price is AU$99
29 Dec - 30 Dec
Hostal Galapagos by Bar de Beto

El Paraiso de Isabela

El Paraiso de Isabela
3.0 star property
Puerto Villamil
7.8 out of 10, Good, (41)
"Clean, large room, close to restaurants and travel agencies "
Canada
Roberto
El Paraiso de Isabela

La Casita de la Playa

La Casita de la Playa
3.0 star property
Puerto Villamil
9.0 out of 10, Wonderful, (82)
"Amazing staff, location on the beach, good breakfast, nice sitting area in the front to enjoy the ocean view. "
Canada
Julie
La Casita de la Playa

Hotel Volcano

Hotel Volcano
3.5 star property
Puerto Villamil
9.2 out of 10, Wonderful, (57)
"Sophia was a great hostess! The ocean view was spectacular. Hotel Volcan is a nice place to stay with great beds. "
United States
Curtis
Hotel Volcano

Hostal los Delfines

Hostal los Delfines
2.5 star property
Puerto Villamil
5.6 out of 10, (4)
"Location is good, close to the beach and nice. "
United States
Anonymous traveller
The price is AU$56
29 Dec - 30 Dec
Hostal los Delfines

Galápagos Isabela Hotel Loja

Galápagos Isabela Hotel Loja
3.0 star property
Puerto Villamil
10.0 out of 10, Exceptional, (6)
"The hotel was nice, great bathroom, large room and nice pool. The staff were friendly and helpful"
United States
Antony
The price is AU$105
6 Jan - 7 Jan 2026
Galápagos Isabela Hotel Loja

Hotel Albemarle Galapagos Beachfront

Hotel Albemarle Galapagos Beachfront
3.5 star property
Puerto Villamil
9.0 out of 10, Wonderful, (91)
"I really like this hotel, excellent location just by the beach, great breakfast and the employees very nice, polite and fantastic customer service also alot of restaurants very close. I will recommend all my family and friends to stay here."
United States
Jorge A.
Hotel Albemarle Galapagos Beachfront
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Frequently asked questions

Where is the best place to stay in Santo Tomás?
Located 7.7 mi (12.5 km) from the heart of Santo Tomás, Hotel Albemarle Galapagos Beachfront is a top choice for your stay, based on our traveller data. Other good options for your visit to the area are Gran Hostal Tintorera and Hotel La Laguna Galapagos. See all available top hotels, or vacation rentals in Santo Tomás.
What are some of the best holiday rentals that Santo Tomás has to offer?
Flip Flop House: This holiday home rental outside of Santo Tomás is located near the beach, and has a terrace, a private garden and air conditioning to put you at ease in your new surroundings. Kitchen amenities include a full-sized fridge, a stovetop and a microwave. You and your friends and family can relax into your holiday with amenities such as a selection of games. See all vacation rentals in Santo Tomás.
If I need to cancel my hotel reservation in Santo Tomás, will I receive a refund?
Yes! The majority of room reservations are fully refundable provided that you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of check in. If you have a reservation that's non-refundable, you may still be able to cancel and be given a refund within 24 hours of booking. Filter your search by fully refundable to find flexible hotel deals in Santo Tomás.
How is it to stay in Santo Tomás?
Those travelling to Santo Tomás will definitely enjoy the sights to see and things to do. There are 83 hotels and other accommodation options in the surrounding area. Find out more about Santo Tomás.
What are the top places to visit in Santo Tomás?
Places to visit in the wider area include Puerto Villamil Beach, Tortuga Island and Concha de Perla Nature Park. You'll also find Wall of Tears Historical Site and Posada de Flamengos in the area. Take a look at what more there is to see and do in Expedia's Santo Tomás guide.
What's the seasonal weather like in Santo Tomás?
The hottest months are usually March and February, with an average temperature of 26°C, while the coldest months are September and October, with an average of 22°C. Average annual precipitation for Santo Tomás is 319 mm.