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Our top choices for Clayton hotels

Chateau Country Inn

Chateau Country Inn
2.0 star property
Clayton
9.6 out of 10, Exceptional, (145 reviews)
"The place is super charming, everything was clean and organized, they cleared the snow in the parking lot so there were no issues, it was a fantastic stay."
United States
Gabriela
The price is AU$156
includes taxes & fees
27 Apr - 28 Apr
Chateau Country Inn

The Clipper Inn

The Clipper Inn
3.0 star property
Clayton
8.4 out of 10, Very good, (278 reviews)
"Great place to stay. "
United States
Shannyn
The price is AU$138
includes taxes & fees
22 Apr - 23 Apr
The Clipper Inn

West Winds Motel & Cottages

West Winds Motel & Cottages
2.5 star property
Clayton
9.2 out of 10, Wonderful, (164 reviews)
"Easy check in Beautiful location right on the River. "
Canada
Nancy
The price is AU$151
includes taxes & fees
1 May - 2 May
West Winds Motel & Cottages

1000 Islands Harbor Hotel

1000 Islands Harbor Hotel
3.5 star property
Clayton
9.2 out of 10, Wonderful, (1,003 reviews)
"The room and entire hotel were clean, comfortable, and beautiful. The staff was very friendly. "
United States
Michael
The price is AU$169
includes taxes & fees
28 Apr - 29 Apr
1000 Islands Harbor Hotel

3 Mi to St Lawrence River: Spacious Ranch Home

3 Mi to St Lawrence River: Spacious Ranch Home
3.0 star property
Clayton
The price is AU$1,510
includes taxes & fees
9 May - 10 May
3 Mi to St Lawrence River: Spacious Ranch Home

Nest Inn

Nest Inn
2.0 star property
Watertown
7.8 out of 10, Good, (70 reviews)
"Excellent stay, host is courteous, helpful, and very timely in response to any issues you may have with the room. The building isn’t perfect, but the owner is working hard to make it a safe, clean, and comfortable stay for all of his guests. Definitely will stay again."
United States
Benjamin
The price is AU$86
includes taxes & fees
6 May - 7 May
Nest Inn

Ramada by Wyndham Watertown/Thousand Islands NY

Ramada by Wyndham Watertown/Thousand Islands NY
2.5 star property
Watertown
8.0 out of 10, Very good, (1,024 reviews)
"Easy check in and check out, the room was clean. "
Canada
Glenn
The price is AU$116
includes taxes & fees
29 Apr - 30 Apr
Ramada by Wyndham Watertown/Thousand Islands NY

Capt.'s Inn & Suites

Capt.'s Inn & Suites
2.0 star property
Alexandria Bay
8.8 out of 10, Excellent, (1,000 reviews)
"Great place"
United States
Lori
The price is AU$111
includes taxes & fees
18 May - 19 May
Capt.'s Inn & Suites

Allen's Budget Motel

Allen's Budget Motel
2.5 star property
Watertown
8.8 out of 10, Excellent, (249 reviews)
"Stay was very comfortable and the staff was excellent "
United States
Randall
The price is AU$90
includes taxes & fees
23 Apr - 24 Apr
Allen's Budget Motel

Quality Inn & Suites Watertown Fort Drum

Quality Inn & Suites Watertown Fort Drum
2.5 star property
Calcium
8.2 out of 10, Very good, (1,005 reviews)
"Very bright and well lit parking area, always super clean throughout,."
Canada
Alan
The price is AU$119
includes taxes & fees
12 May - 13 May
Quality Inn & Suites Watertown Fort Drum

Hampton Inn Watertown

Hampton Inn Watertown
2.5 star property
Watertown
9.0 out of 10, Wonderful, (1,001 reviews)
"Staff was very polite, the room was beautiful and the pool was awesome!! "
United States
Jessica
The price is AU$203
includes taxes & fees
2 May - 3 May
Hampton Inn Watertown

Days Inn by Wyndham Watertown Fort Drum

Days Inn by Wyndham Watertown Fort Drum
2.0 star property
Calcium
8.8 out of 10, Excellent, (1,004 reviews)
"Clean rooms and incredibly friendly staff! "
Canada
Brianna
The price is AU$116
includes taxes & fees
23 Apr - 24 Apr
Days Inn by Wyndham Watertown Fort Drum

Hilton Garden Inn Watertown/Thousand Islands

Hilton Garden Inn Watertown/Thousand Islands
3.0 star property
Watertown
9.2 out of 10, Wonderful, (1,004 reviews)
"Clean room and excellent staff loved the hot tub "
United States
Shelby
The price is AU$233
includes taxes & fees
10 May - 11 May
Hilton Garden Inn Watertown/Thousand Islands

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG
2.5 star property
Watertown
9.2 out of 10, Wonderful, (1,001 reviews)
"Everything was good. I would stay there again. "
United States
Kelly
The price is AU$189
includes taxes & fees
10 May - 11 May
Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Royal Inn Motel

Royal Inn Motel
2.0 star property
Watertown
7.2 out of 10, Good, (419 reviews)
"Very nice stay"
United States
Kevin
The price is AU$88
includes taxes & fees
28 Apr - 29 Apr
Royal Inn Motel

Fairfield Inn & Suites Watertown Thousand Islands

Fairfield Inn & Suites Watertown Thousand Islands
3.0 star property
Watertown
9.2 out of 10, Wonderful, (732 reviews)
"Very nice place. "
Canada
Jocelyn
The price is AU$238
includes taxes & fees
26 Apr - 27 Apr
Fairfield Inn & Suites Watertown Thousand Islands

Comfort Inn & Suites Watertown - 1000 Islands

Comfort Inn & Suites Watertown - 1000 Islands
2.5 star property
Watertown
8.4 out of 10, Very good, (1,024 reviews)
"The hotel was perfect for the price! Staff was friendly, and the rooms were great! "
United States
Chrysta
The price is AU$174
includes taxes & fees
17 May - 18 May
Comfort Inn & Suites Watertown - 1000 Islands

Travel Inn

Travel Inn
2.0 star property
Watertown
6.0 out of 10, (15 reviews)
"Bed was comfortable. "
Canada
Karen
The price is AU$107
includes taxes & fees
23 Apr - 24 Apr
Travel Inn

Capt. Thomson's Resort

Capt. Thomson's Resort
3.0 star property
Alexandria Bay Downtown
9.4 out of 10, Exceptional, (1,000 reviews)
"Awesome hotel and location!"
United States
John
The price is AU$142
includes taxes & fees
28 Apr - 29 Apr
Capt. Thomson's Resort

The GillHouse

The GillHouse
2.0 star property
Henderson Harbor
9.2 out of 10, Wonderful, (5 reviews)
"Clean room "
United States
Byron
The price is AU$166
includes taxes & fees
10 May - 11 May
The GillHouse
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Stay near popular Clayton attractions

Learn more about Clayton

Nestled along the St. Lawrence River, this charming village invites you to explore its historic city centre and scenic waterfront. Cruise the Thousand Islands, visit Boldt Castle on Heart Island, or cast a line for bass in one of Clayton's many fishing spots.

Clayton, NY, USA - 02-09-2025:  Winter aerial image Clayton, NY along a frozen St Lawrence River

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Recent Reviews in Clayton

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Frequently asked questions

Where is the best place to stay in Clayton?
1000 Islands Harbor Hotel is one of the top choices for your stay based on our traveller data. This hotel offers a restaurant and an indoor pool. Other good choices for your visit include Chateau Country Inn and The Clipper Inn. See all available top hotels, or vacation rentals in Clayton.
What are some of the best holiday rentals that Clayton has to offer?
Waterfront 5 Bedroom Grindstone Island Farmhouse: This highly rated holiday home rental in Clayton is located on a river, and has a patio, a garden and a BBQ to put you at ease in your new surroundings. It has 5 bedrooms, as well as a kitchen with a dishwasher, a fridge and a stovetop, so that you can cook with friends or family. Make the most of games in this rental home to help you unwind. Other favourite homes for rent in Clayton are Visit Us For The Best View Of The Thousand Islands and Located in the heart of the Thousand Islands, directly across from ClaytonNY. See all vacation rentals in Clayton.
If I need to cancel my hotel reservation in Clayton, will I receive a refund?
Yes, the majority of room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which often is within 24-48 hours of check in. If you have a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Filter your search by fully refundable to find flexible hotel deals in Clayton.
What's the best dog-friendly place to stay in Clayton?
The Clipper Inn is a top dog-friendly inn, and offers a restaurant along with free WiFi for its human guests. West Winds Motel & Cottages is another option for a stay with your pet. See more pet-friendly hotel accommodations in Clayton.
What's the best accommodation for a golf trip to Clayton?
The Clipper Inn is a top inn that has an adjacent golf course and features free WiFi. Another good choice is Wooden Boat Inn if you'd like to be close to a golf course while in town. You can tee off at C-Way Golf Course during your trip. See more golf hotels in Clayton.
What are some accommodation options with pools in Clayton?
1000 Islands Harbor Hotel: Features free self parking, an indoor pool and complimentary wireless Internet access. Another option that features an on-site pool is West Winds Motel & Cottages. View all hotels with pools in Clayton.
What's it like staying in Clayton?
Visitors to Clayton will definitely enjoy the riverfront. Tourists can also enjoy so much more including its coffee shops. In Clayton, there are 121 hotels and other accommodation options to choose from. Find out more about Clayton.
What is there to see in Clayton?
Cultural venues include The Clayton Opera House, Thousand Islands Museum and Antique Boat Museum. Natural beauty is on display at Lake Ontario, Grenell Island and Blind Bay. A couple of additional sights to add to your itinerary are 1000 Islands River Rat Cheese and Clayton Marina. Take a look at what more there is to see and do in Expedia's Clayton guide.
What's the seasonal weather like in Clayton?
The hottest months are usually July and August, with an average temperature of 19°C, while the coldest months are January and February, with an average of -3°C. The snowiest months in Clayton are January, February, March and November, with each month seeing an average of 47 cm of snowfall.

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